Wall clock time and date at job start Mon Mar 30 2020 02:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48504 * 109.47252 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47526 * 59.99899 * 3 2 1 6 6 H 1.48502 * 109.46986 * 299.99575 * 3 2 1 7 7 C 1.37884 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99725 * 187.73984 * 7 2 1 9 9 C 1.50699 * 120.00219 * 7.74073 * 7 2 1 10 10 H 1.08999 * 109.47111 * 304.35861 * 9 7 2 11 11 C 1.53011 * 109.46722 * 64.35534 * 9 7 2 12 12 N 1.46903 * 109.46801 * 65.25184 * 11 9 7 13 13 C 1.52994 * 109.47251 * 184.35604 * 9 7 2 14 14 H 1.09005 * 109.50164 * 299.23777 * 13 9 7 15 15 C 1.53117 * 109.50291 * 59.35664 * 13 9 7 16 16 C 1.53121 * 109.15765 * 177.59274 * 15 13 9 17 17 C 1.53036 * 109.28260 * 302.34674 * 16 15 13 18 18 N 1.46847 * 109.52028 * 59.18078 * 17 16 15 19 19 C 1.46846 * 111.19956 * 298.25783 * 18 17 16 20 20 H 0.96999 * 120.00251 * 184.13814 * 1 2 3 21 21 H 1.09000 * 109.46934 * 185.25014 * 11 9 7 22 22 H 1.08994 * 109.46767 * 305.25031 * 11 9 7 23 23 H 1.00901 * 110.99437 * 181.81580 * 12 11 9 24 24 H 1.00896 * 110.99734 * 305.76884 * 12 11 9 25 25 H 1.08995 * 109.52830 * 297.50037 * 15 13 9 26 26 H 1.09000 * 109.52159 * 57.69140 * 15 13 9 27 27 H 1.09002 * 109.50005 * 182.40513 * 16 15 13 28 28 H 1.09004 * 109.50205 * 62.29345 * 16 15 13 29 29 H 1.08998 * 109.45866 * 299.16651 * 17 16 15 30 30 H 1.08998 * 109.46137 * 179.19892 * 17 16 15 31 31 H 1.00900 * 111.00256 * 62.35604 * 18 17 16 32 32 H 1.09004 * 109.46461 * 301.72899 * 19 18 17 33 33 H 1.09003 * 109.46509 * 181.76052 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 1.2124 6 1 1.8905 2.3963 -1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0771 -1.1984 0.1265 9 6 1.2613 -2.4934 -0.1747 10 1 0.4831 -2.5720 0.5845 11 6 0.6232 -2.5324 -1.5649 12 7 1.6780 -2.5531 -2.5872 13 6 2.2368 -3.6628 -0.0282 14 1 3.0076 -3.5920 -0.7958 15 6 2.8877 -3.6151 1.3569 16 6 3.8166 -4.8218 1.5174 17 6 3.0130 -6.1084 1.3156 18 7 2.4113 -6.1062 -0.0239 19 6 1.4791 -4.9831 -0.1853 20 1 -0.4850 -0.8378 0.0606 21 1 0.0095 -3.4283 -1.6579 22 1 0.0000 -1.6490 -1.7035 23 1 1.2820 -2.5491 -3.5153 24 1 2.3167 -1.7819 -2.4633 25 1 3.4644 -2.6956 1.4570 26 1 2.1141 -3.6463 2.1242 27 1 4.2503 -4.8166 2.5175 28 1 4.6127 -4.7695 0.7747 29 1 2.2259 -6.1666 2.0673 30 1 3.6745 -6.9691 1.4152 31 1 3.1222 -6.0917 -0.7397 32 1 0.6990 -5.0465 0.5735 33 1 1.0263 -5.0264 -1.1759 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260635489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:01 Heat of formation + Delta-G solvation = -46.697628 kcal Electronic energy + Delta-G solvation = -13521.954910 eV Core-core repulsion = 11387.154642 eV Total energy + Delta-G solvation = -2134.800268 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.11986 -37.13408 -33.95746 -32.82654 -31.94146 -28.34514 -26.38445 -24.18862 -23.87761 -21.56662 -20.80818 -18.60976 -16.96343 -16.83558 -15.96755 -15.67848 -15.44622 -15.13644 -14.67955 -14.22042 -13.94104 -13.68957 -13.01154 -12.80743 -12.64965 -12.45569 -12.32519 -12.06838 -11.97096 -11.81027 -11.28779 -10.85934 -10.53134 -10.43943 -9.38612 -9.14308 -8.50592 -6.23065 1.51332 1.57606 1.73916 2.56451 3.22654 3.48175 3.91247 4.02364 4.13225 4.19669 4.32748 4.54221 4.59648 4.65318 4.73447 4.85175 4.95676 5.04237 5.06718 5.15653 5.25758 5.36297 5.41015 5.57728 5.77661 6.12778 6.19179 6.27730 6.46050 6.55555 6.69487 6.86580 7.52724 8.82990 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042429 B = 0.011578 C = 0.010154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.769565 B = 2417.883361 C = 2756.863467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.031 4.031 3 Si 1.107 2.893 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.579 4.579 8 H 0.043 0.957 9 C 0.039 3.961 10 H -0.017 1.017 11 C 0.075 3.925 12 N -0.830 5.830 13 C -0.080 4.080 14 H 0.062 0.938 15 C -0.105 4.105 16 C -0.148 4.148 17 C 0.059 3.941 18 N -0.685 5.685 19 C 0.072 3.928 20 H 0.258 0.742 21 H 0.047 0.953 22 H -0.003 1.003 23 H 0.331 0.669 24 H 0.340 0.660 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.344 0.656 32 H 0.047 0.953 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.312 -8.107 -0.546 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.229 4.229 3 Si 0.931 3.069 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.618 4.618 8 H 0.061 0.939 9 C 0.020 3.980 10 H 0.001 0.999 11 C -0.057 4.057 12 N -0.358 5.358 13 C -0.100 4.100 14 H 0.081 0.919 15 C -0.143 4.143 16 C -0.187 4.187 17 C -0.071 4.071 18 N -0.313 5.313 19 C -0.057 4.057 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.016 0.984 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.161 0.839 32 H 0.065 0.935 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.824 -7.669 -0.103 9.630 hybrid contribution -0.075 0.488 -0.124 0.509 sum 5.749 -7.181 -0.226 9.202 Atomic orbital electron populations 1.70844 1.07888 1.30210 1.48886 1.26932 0.96521 1.05787 0.93622 0.83041 0.74550 0.72313 0.76947 1.19723 1.21544 1.20960 1.22199 0.94572 0.92762 1.52235 0.93877 1.18793 0.93711 0.94314 0.91216 0.99913 1.21661 0.92846 0.96538 0.94624 1.58798 1.19721 1.52362 1.04956 1.21398 0.97851 0.94770 0.96011 0.91918 1.21489 0.98096 0.97770 0.96950 1.22238 0.98312 0.95831 1.02335 1.22051 0.97558 0.96565 0.90886 1.60761 1.21888 1.43715 1.04953 1.21928 0.94846 0.88137 1.00824 0.93145 0.93473 0.98449 0.85759 0.84746 0.93751 0.94710 0.90804 0.91977 0.91959 0.88745 0.83854 0.93475 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.91 12.81 21.45 0.27 -55.64 16 2 C -0.03 -1.68 5.18 84.66 0.44 -1.24 16 3 Si 1.11 49.63 29.91 68.60 2.05 51.68 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.58 -30.67 6.72 25.60 0.17 -30.50 16 8 H 0.04 2.31 6.85 -2.91 -0.02 2.29 16 9 C 0.04 1.88 1.35 -11.54 -0.02 1.86 16 10 H -0.02 -0.94 7.50 -2.39 -0.02 -0.96 16 11 C 0.07 3.36 5.69 86.31 0.49 3.86 16 12 N -0.83 -32.25 8.63 -186.70 -1.61 -33.87 16 13 C -0.08 -3.21 1.67 -10.74 -0.02 -3.23 16 14 H 0.06 2.61 7.44 -2.38 -0.02 2.60 16 15 C -0.11 -4.03 4.97 30.67 0.15 -3.88 16 16 C -0.15 -4.28 6.08 30.65 0.19 -4.09 16 17 C 0.06 1.57 6.55 86.33 0.57 2.13 16 18 N -0.69 -20.29 6.87 -514.00 -3.53 -23.82 16 19 C 0.07 2.57 5.48 86.33 0.47 3.04 16 20 H 0.26 15.62 6.21 -92.71 -0.58 15.04 16 21 H 0.05 1.98 6.76 -2.39 -0.02 1.96 16 22 H 0.00 -0.14 6.27 -2.39 -0.01 -0.16 16 23 H 0.33 11.13 9.08 -89.69 -0.81 10.32 16 24 H 0.34 14.17 8.04 -89.70 -0.72 13.45 16 25 H 0.04 1.88 6.76 -2.39 -0.02 1.86 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.34 9.45 8.86 -89.69 -0.79 8.65 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.07 2.53 6.62 -2.39 -0.02 2.51 16 Total: -1.00 -58.84 252.49 -1.39 -60.23 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -1.02 Total: 33.45 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 2.45 Total: -32.05 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.87 Total: -113.32 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.05 Total: 51.68 kcal Total: -58.84 -1.39 -60.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260635489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.535 kcal (2) G-P(sol) polarization free energy of solvation -58.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds