Wall clock time and date at job start Mon Mar 30 2020 02:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47413 * 2 1 4 4 H 1.09007 * 109.47629 * 305.68635 * 3 2 1 5 5 C 1.53006 * 109.47389 * 185.68818 * 3 2 1 6 6 C 1.50694 * 109.46849 * 65.00090 * 5 3 2 7 7 H 1.08002 * 120.00254 * 359.97438 * 6 5 3 8 8 C 1.37880 * 119.99972 * 180.02562 * 6 5 3 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00331 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47062 * 90.00018 * 10 8 6 12 12 H 1.48501 * 109.47390 * 210.00211 * 10 8 6 13 13 H 1.48504 * 109.47265 * 330.00160 * 10 8 6 14 14 C 1.53001 * 109.47378 * 65.68702 * 3 2 1 15 15 H 1.08997 * 110.35550 * 296.65468 * 14 3 2 16 16 C 1.54948 * 110.30725 * 58.79473 * 14 3 2 17 17 C 1.55299 * 100.97988 * 155.34230 * 16 14 3 18 18 C 1.54438 * 102.22893 * 325.91623 * 17 16 14 19 19 O 1.43235 * 107.60462 * 21.30227 * 18 17 16 20 20 H 1.08999 * 109.46968 * 63.72587 * 1 2 3 21 21 H 1.08994 * 109.47366 * 183.72722 * 1 2 3 22 22 H 1.09005 * 109.46955 * 303.73098 * 1 2 3 23 23 H 1.09006 * 109.47083 * 240.00157 * 2 1 3 24 24 H 1.08998 * 109.47078 * 120.00383 * 2 1 3 25 25 H 1.09002 * 109.47137 * 184.99704 * 5 3 2 26 26 H 1.08999 * 109.46559 * 304.99992 * 5 3 2 27 27 H 0.96996 * 120.00029 * 179.97438 * 9 8 6 28 28 H 1.09000 * 111.12426 * 273.28173 * 16 14 3 29 29 H 1.08997 * 111.12843 * 37.39706 * 16 14 3 30 30 H 1.09002 * 110.85289 * 84.07942 * 17 16 14 31 31 H 1.09007 * 110.84562 * 207.69628 * 17 16 14 32 32 H 1.09001 * 109.78991 * 261.79688 * 18 17 16 33 33 H 1.09003 * 109.92647 * 140.88039 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5960 1.9849 -0.8347 5 6 3.5634 1.4448 -0.1430 6 6 3.9422 0.8880 -1.4911 7 1 3.1734 0.5644 -2.1771 8 6 5.2704 0.7907 -1.8483 9 7 6.2066 1.1843 -1.0127 10 14 5.7400 0.0999 -3.5191 11 1 5.8116 1.2045 -4.5091 12 1 7.0636 -0.5669 -3.4248 13 1 4.7183 -0.8871 -3.9517 14 6 1.6502 2.1213 1.3145 15 1 0.5654 2.1805 1.4035 16 6 2.2470 1.3475 2.5170 17 6 2.3115 2.4699 3.5884 18 6 2.6248 3.7187 2.7355 19 8 2.2289 3.4339 1.3887 20 1 -0.3633 0.4549 -0.9215 21 1 -0.3634 -1.0254 0.0668 22 1 -0.3633 0.5707 0.8547 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9351 2.4656 -0.0540 26 1 4.0028 0.8284 0.6413 27 1 7.1409 1.1155 -1.2639 28 1 1.5853 0.5408 2.8325 29 1 3.2421 0.9680 2.2852 30 1 1.3527 2.5776 4.0958 31 1 3.1109 2.2776 4.3041 32 1 3.6935 3.9305 2.7699 33 1 2.0658 4.5755 3.1119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:01 Heat of formation + Delta-G solvation = -74.160991 kcal Electronic energy + Delta-G solvation = -13295.984648 eV Core-core repulsion = 11127.700728 eV Total energy + Delta-G solvation = -2168.283920 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.18952 -35.33068 -32.49372 -31.50308 -29.56461 -27.87068 -24.67143 -22.23048 -21.98306 -21.30210 -18.34355 -16.65232 -15.93787 -15.28280 -14.53459 -14.35611 -13.61822 -13.22529 -12.84104 -12.60347 -12.39832 -11.97325 -11.31863 -11.16406 -10.99203 -10.87745 -10.77195 -10.68697 -10.50414 -10.18829 -9.94427 -9.46258 -9.28123 -8.87475 -8.59752 -8.23164 -5.90609 -3.91015 3.36700 3.42801 3.45653 4.35800 4.52987 4.94029 5.18704 5.37458 5.44850 5.57437 5.68053 5.71404 5.77826 5.92482 5.97847 6.09323 6.10242 6.20417 6.33779 6.44164 6.49984 6.62353 6.68013 7.01436 7.09260 7.29769 7.67373 7.82586 8.02137 8.13943 8.54614 9.16024 9.71287 11.20796 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036757 B = 0.010826 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.583286 B = 2585.761458 C = 3078.747570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.082 4.082 4 H 0.061 0.939 5 C 0.031 3.969 6 C -0.513 4.513 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.887 3.113 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.087 3.913 15 H 0.055 0.945 16 C -0.153 4.153 17 C -0.157 4.157 18 C 0.053 3.947 19 O -0.373 6.373 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.026 0.974 26 H 0.015 0.985 27 H 0.258 0.742 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 0.150 7.176 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.100 4.100 4 H 0.080 0.920 5 C -0.005 4.005 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 C 0.030 3.970 15 H 0.072 0.928 16 C -0.190 4.190 17 C -0.194 4.194 18 C -0.024 4.024 19 O -0.292 6.292 20 H 0.068 0.932 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.461 0.300 7.021 10.998 hybrid contribution 0.356 -0.455 -0.669 0.884 sum -8.105 -0.155 6.351 10.299 Atomic orbital electron populations 1.21892 0.97780 1.00351 1.01080 1.21508 0.93366 0.97201 1.02700 1.21322 1.00997 0.93815 0.93899 0.92028 1.19096 0.87524 0.97661 0.96267 1.21295 0.91606 1.40941 1.01298 0.92749 1.25000 0.96801 0.95851 0.96824 1.69971 0.99995 1.48130 1.35499 0.86675 0.77746 0.79174 0.84872 1.20792 1.21385 1.19970 1.23102 0.95262 0.82016 0.96615 0.92759 1.23394 1.03527 0.97633 0.94463 1.23110 1.01762 0.95878 0.98678 1.23012 0.99846 0.96546 0.83016 1.88444 1.80901 1.33579 1.26326 0.93171 0.93709 0.93489 0.90544 0.92730 0.95596 0.96694 0.93215 0.90856 0.88876 0.91444 0.90579 0.91639 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.77 37.16 0.36 -1.95 16 2 C -0.11 -2.05 5.15 -26.74 -0.14 -2.19 16 3 C -0.08 -1.73 1.91 -90.62 -0.17 -1.91 16 4 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 5 C 0.03 0.82 3.98 -27.88 -0.11 0.71 16 6 C -0.51 -14.62 8.33 -34.44 -0.29 -14.90 16 7 H 0.05 1.51 7.08 -52.49 -0.37 1.13 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.09 1.61 2.97 -25.70 -0.08 1.54 16 15 H 0.05 0.92 6.72 -51.93 -0.35 0.57 16 16 C -0.15 -2.51 5.23 -24.48 -0.13 -2.63 16 17 C -0.16 -2.19 7.02 -24.76 -0.17 -2.37 16 18 C 0.05 0.85 7.80 37.91 0.30 1.15 16 19 O -0.37 -7.59 10.11 -35.23 -0.36 -7.94 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.65 6.51 -51.93 -0.34 0.31 16 23 H 0.08 1.57 6.81 -51.93 -0.35 1.21 16 24 H 0.05 0.98 6.87 -51.93 -0.36 0.62 16 25 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 26 H 0.01 0.41 6.41 -51.93 -0.33 0.07 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 29 H 0.09 1.76 6.05 -51.93 -0.31 1.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 258.96 15.07 3.90 3.90 Total: -1.00 -30.72 258.96 -6.57 -37.29 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.31 Total: -2.60 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -0.53 Total: -21.03 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.36 Total: -7.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.72 -6.57 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.867 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds