Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 H 1.08996 * 109.46963 * 305.75424 * 3 2 1 5 5 C 1.53003 * 109.47144 * 65.75453 * 3 2 1 6 6 C 1.50696 * 109.46974 * 185.59181 * 5 3 2 7 7 H 1.08004 * 119.99843 * 355.26179 * 6 5 3 8 8 C 1.37882 * 120.00187 * 175.26000 * 6 5 3 9 9 N 1.31504 * 119.99932 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99610 * 0.27796 * 8 6 5 11 11 H 1.48505 * 109.46798 * 269.72251 * 10 8 6 12 12 H 1.48496 * 109.47415 * 29.71947 * 10 8 6 13 13 H 1.48498 * 109.47028 * 149.72612 * 10 8 6 14 14 C 1.52993 * 109.46750 * 185.75523 * 3 2 1 15 15 H 1.09003 * 109.82338 * 185.69762 * 14 3 2 16 16 C 1.54383 * 109.83514 * 64.81351 * 14 3 2 17 17 C 1.55446 * 102.18768 * 219.18068 * 16 14 3 18 18 C 1.54945 * 100.99090 * 34.03637 * 17 16 14 19 19 O 1.43238 * 109.83443 * 306.58214 * 14 3 2 20 20 H 1.09008 * 109.47307 * 294.04937 * 1 2 3 21 21 H 1.08999 * 109.47557 * 54.04690 * 1 2 3 22 22 H 1.08995 * 109.47323 * 174.05370 * 1 2 3 23 23 H 1.09001 * 109.46964 * 239.99746 * 2 1 3 24 24 H 1.09008 * 109.46679 * 119.99781 * 2 1 3 25 25 H 1.08997 * 109.46832 * 65.59015 * 5 3 2 26 26 H 1.09000 * 109.46680 * 305.59393 * 5 3 2 27 27 H 0.97006 * 119.99802 * 180.02562 * 9 8 6 28 28 H 1.09000 * 110.84515 * 337.32186 * 16 14 3 29 29 H 1.09003 * 110.84556 * 100.93555 * 16 14 3 30 30 H 1.09000 * 111.05783 * 276.12244 * 17 16 14 31 31 H 1.08995 * 111.18281 * 152.00667 * 17 16 14 32 32 H 1.09004 * 110.31117 * 204.69310 * 18 17 16 33 33 H 1.09000 * 110.39318 * 82.56536 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8340 5 6 1.6515 2.1208 1.3153 6 6 2.0318 3.5780 1.2605 7 1 2.5718 3.9634 0.4082 8 6 1.6905 4.4191 2.2983 9 7 2.0220 5.6908 2.2501 10 14 0.7634 3.7507 3.7759 11 1 -0.6977 3.8672 3.5375 12 1 1.1195 2.3236 3.9795 13 1 1.1313 4.5302 4.9851 14 6 3.5631 1.4449 -0.1446 15 1 3.9424 2.4618 -0.0442 16 6 3.9593 0.8719 -1.5224 17 6 5.2182 0.0279 -1.1771 18 6 4.8530 -0.4809 0.2402 19 8 4.1479 0.6069 0.8591 20 1 -0.3634 0.4188 0.9385 21 1 -0.3634 0.6033 -0.8319 22 1 -0.3634 -1.0221 -0.1065 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 2.1755 1.6393 2.1409 26 1 0.5757 2.0315 1.4662 27 1 1.7822 6.2825 2.9805 28 1 3.1664 0.2398 -1.9222 29 1 4.2067 1.6729 -2.2190 30 1 6.1125 0.6505 -1.1526 31 1 5.3391 -0.8020 -1.8733 32 1 5.7569 -0.7146 0.8028 33 1 4.2111 -1.3594 0.1747 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643427.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = -70.803406 kcal Electronic energy + Delta-G solvation = -13359.344171 eV Core-core repulsion = 11191.205848 eV Total energy + Delta-G solvation = -2168.138324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.29108 -35.22530 -32.40541 -31.63169 -29.95012 -28.17529 -24.95958 -22.18496 -21.76852 -20.96511 -18.69224 -16.77862 -16.15416 -15.53022 -14.52756 -14.20356 -13.57253 -13.24179 -13.02355 -12.78819 -12.36180 -12.06807 -11.40044 -11.31598 -11.22166 -11.06779 -10.84901 -10.66727 -10.31025 -10.26878 -9.91747 -9.61368 -9.17827 -9.11699 -8.63446 -8.39700 -5.94656 -3.90147 3.37921 3.45437 3.52685 4.38274 4.55466 4.85729 5.10801 5.27724 5.41170 5.52744 5.56369 5.59978 5.68751 5.82969 5.90658 5.98188 6.09159 6.19745 6.28691 6.39674 6.40004 6.43738 6.68134 6.86284 6.90416 7.07530 7.39338 7.62464 7.75344 7.92921 8.63717 9.09693 9.69579 11.18973 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.011552 C = 0.010194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.879003 B = 2423.147906 C = 2746.043658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.083 4.083 4 H 0.069 0.931 5 C -0.006 4.006 6 C -0.512 4.512 7 H 0.070 0.930 8 C 0.065 3.935 9 N -0.908 5.908 10 Si 0.877 3.123 11 H -0.279 1.279 12 H -0.264 1.264 13 H -0.290 1.290 14 C 0.093 3.907 15 H 0.092 0.908 16 C -0.156 4.156 17 C -0.156 4.156 18 C 0.049 3.951 19 O -0.367 6.367 20 H 0.058 0.942 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.022 0.978 26 H 0.013 0.987 27 H 0.261 0.739 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -12.321 -6.174 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.102 4.102 4 H 0.087 0.913 5 C -0.044 4.044 6 C -0.550 4.550 7 H 0.088 0.912 8 C -0.135 4.135 9 N -0.547 5.547 10 Si 0.705 3.295 11 H -0.205 1.205 12 H -0.189 1.189 13 H -0.216 1.216 14 C 0.036 3.964 15 H 0.110 0.890 16 C -0.194 4.194 17 C -0.194 4.194 18 C -0.028 4.028 19 O -0.286 6.286 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.425 -12.118 -5.849 13.673 hybrid contribution -0.470 -0.205 0.562 0.761 sum 1.955 -12.323 -5.287 13.551 Atomic orbital electron populations 1.21799 0.96621 1.00052 1.02235 1.21586 0.95239 0.97942 1.00793 1.21421 0.93431 0.94357 1.00945 0.91309 1.19585 0.95730 0.96143 0.92906 1.21164 1.36203 0.91754 1.05833 0.91153 1.24998 0.95732 0.94689 0.98108 1.69917 1.47829 1.04108 1.32889 0.86808 0.80215 0.79732 0.82748 1.20534 1.18896 1.21582 1.22848 0.93994 0.94905 0.84690 0.88988 1.23328 0.97296 0.99866 0.98899 1.23256 0.98826 0.99920 0.97410 1.23277 0.95864 0.91018 0.92674 1.88515 1.70133 1.38482 1.31492 0.92329 0.93051 0.93985 0.93422 0.92067 0.95989 0.96901 0.92956 0.90612 0.90594 0.90755 0.90850 0.90733 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.54 37.16 0.35 -2.02 16 2 C -0.12 -2.01 4.90 -26.73 -0.13 -2.14 16 3 C -0.08 -1.67 1.61 -90.62 -0.15 -1.82 16 4 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 5 C -0.01 -0.16 3.36 -27.88 -0.09 -0.25 16 6 C -0.51 -14.77 8.98 -34.44 -0.31 -15.08 16 7 H 0.07 2.15 7.21 -52.48 -0.38 1.77 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 10 Si 0.88 22.61 27.38 -169.99 -4.65 17.95 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.26 -6.67 6.67 56.52 0.38 -6.29 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 C 0.09 1.78 3.08 -26.01 -0.08 1.70 16 15 H 0.09 2.03 6.78 -51.93 -0.35 1.68 16 16 C -0.16 -2.29 6.35 -24.71 -0.16 -2.45 16 17 C -0.16 -1.99 7.16 -24.41 -0.17 -2.17 16 18 C 0.05 0.71 7.71 38.18 0.29 1.00 16 19 O -0.37 -7.21 9.76 -35.23 -0.34 -7.56 16 20 H 0.06 1.01 6.76 -51.92 -0.35 0.66 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.71 6.22 -51.93 -0.32 0.39 16 24 H 0.06 1.09 7.74 -51.92 -0.40 0.69 16 25 H 0.02 0.57 7.12 -51.93 -0.37 0.20 16 26 H 0.01 0.31 5.65 -51.93 -0.29 0.02 16 27 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 28 H 0.08 1.04 6.06 -51.93 -0.31 0.72 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 257.14 15.07 3.88 3.88 Total: -1.00 -31.35 257.14 -6.22 -37.57 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.33 Total: -2.67 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: -0.54 Total: -21.38 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.77 Total: -27.79 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.34 Total: -7.56 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.65 Total: 17.95 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.35 -6.22 -37.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643427.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.234 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds