Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47110 * 2 1 4 4 H 1.08996 * 109.46963 * 305.75424 * 3 2 1 5 5 C 1.53003 * 109.47144 * 65.75453 * 3 2 1 6 6 C 1.50696 * 109.46974 * 185.59181 * 5 3 2 7 7 H 1.08004 * 119.99843 * 355.26179 * 6 5 3 8 8 C 1.37882 * 120.00187 * 175.26000 * 6 5 3 9 9 N 1.31504 * 119.99932 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99610 * 0.27796 * 8 6 5 11 11 H 1.48505 * 109.46798 * 269.72251 * 10 8 6 12 12 H 1.48496 * 109.47415 * 29.71947 * 10 8 6 13 13 H 1.48498 * 109.47028 * 149.72612 * 10 8 6 14 14 C 1.52993 * 109.46750 * 185.75523 * 3 2 1 15 15 H 1.09003 * 109.82338 * 185.69762 * 14 3 2 16 16 C 1.54383 * 109.83514 * 64.81351 * 14 3 2 17 17 C 1.55446 * 102.18768 * 219.18068 * 16 14 3 18 18 C 1.54945 * 100.99090 * 34.03637 * 17 16 14 19 19 O 1.43238 * 109.83443 * 306.58214 * 14 3 2 20 20 H 1.09008 * 109.47307 * 294.04937 * 1 2 3 21 21 H 1.08999 * 109.47557 * 54.04690 * 1 2 3 22 22 H 1.08995 * 109.47323 * 174.05370 * 1 2 3 23 23 H 1.09001 * 109.46964 * 239.99746 * 2 1 3 24 24 H 1.09008 * 109.46679 * 119.99781 * 2 1 3 25 25 H 1.08997 * 109.46832 * 65.59015 * 5 3 2 26 26 H 1.09000 * 109.46680 * 305.59393 * 5 3 2 27 27 H 0.97006 * 119.99802 * 180.02562 * 9 8 6 28 28 H 1.09000 * 110.84515 * 337.32186 * 16 14 3 29 29 H 1.09003 * 110.84556 * 100.93555 * 16 14 3 30 30 H 1.09000 * 111.05783 * 276.12244 * 17 16 14 31 31 H 1.08995 * 111.18281 * 152.00667 * 17 16 14 32 32 H 1.09004 * 110.31117 * 204.69310 * 18 17 16 33 33 H 1.09000 * 110.39318 * 82.56536 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9852 -0.8340 5 6 1.6515 2.1208 1.3153 6 6 2.0318 3.5780 1.2605 7 1 2.5718 3.9634 0.4082 8 6 1.6905 4.4191 2.2983 9 7 2.0220 5.6908 2.2501 10 14 0.7634 3.7507 3.7759 11 1 -0.6977 3.8672 3.5375 12 1 1.1195 2.3236 3.9795 13 1 1.1313 4.5302 4.9851 14 6 3.5631 1.4449 -0.1446 15 1 3.9424 2.4618 -0.0442 16 6 3.9593 0.8719 -1.5224 17 6 5.2182 0.0279 -1.1771 18 6 4.8530 -0.4809 0.2402 19 8 4.1479 0.6069 0.8591 20 1 -0.3634 0.4188 0.9385 21 1 -0.3634 0.6033 -0.8319 22 1 -0.3634 -1.0221 -0.1065 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 2.1755 1.6393 2.1409 26 1 0.5757 2.0315 1.4662 27 1 1.7822 6.2825 2.9805 28 1 3.1664 0.2398 -1.9222 29 1 4.2067 1.6729 -2.2190 30 1 6.1125 0.6505 -1.1526 31 1 5.3391 -0.8020 -1.8733 32 1 5.7569 -0.7146 0.8028 33 1 4.2111 -1.3594 0.1747 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643427.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = -90.961941 kcal Electronic energy + Delta-G solvation = -13360.218311 eV Core-core repulsion = 11191.205848 eV Total energy + Delta-G solvation = -2169.012464 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.66593 -36.81262 -34.55235 -32.88412 -31.51800 -29.84405 -26.53752 -23.96147 -23.07992 -22.27298 -20.29265 -18.96155 -17.46169 -16.86267 -16.48156 -15.57812 -15.24558 -14.87030 -14.50889 -14.18601 -14.06512 -13.72271 -13.06587 -12.85843 -12.54014 -12.50610 -12.24742 -12.04462 -11.89803 -11.77716 -11.66136 -11.41167 -11.05017 -10.83093 -10.72555 -10.13114 -8.26622 -6.26941 1.31814 1.35080 1.48052 2.37200 3.09095 3.12422 3.70826 3.94059 4.07951 4.17031 4.23157 4.33239 4.48691 4.58491 4.76693 4.84779 4.92375 4.96128 4.96717 5.03222 5.08960 5.18303 5.22463 5.34255 5.41439 5.44647 5.57654 5.73016 5.76846 6.32792 6.38841 6.79214 7.36137 8.90191 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.011552 C = 0.010194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.879003 B = 2423.147906 C = 2746.043658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.083 4.083 4 H 0.063 0.937 5 C 0.000 4.000 6 C -0.516 4.516 7 H 0.035 0.965 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.944 3.056 11 H -0.264 1.264 12 H -0.256 1.256 13 H -0.284 1.284 14 C 0.090 3.910 15 H 0.044 0.956 16 C -0.149 4.149 17 C -0.145 4.145 18 C 0.038 3.962 19 O -0.401 6.401 20 H 0.039 0.961 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.006 0.994 26 H 0.017 0.983 27 H 0.264 0.736 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -15.014 -6.742 16.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.101 4.101 4 H 0.081 0.919 5 C -0.037 4.037 6 C -0.554 4.554 7 H 0.053 0.947 8 C -0.193 4.193 9 N -0.595 5.595 10 Si 0.768 3.232 11 H -0.189 1.189 12 H -0.180 1.180 13 H -0.210 1.210 14 C 0.033 3.967 15 H 0.062 0.938 16 C -0.186 4.186 17 C -0.183 4.183 18 C -0.038 4.038 19 O -0.321 6.321 20 H 0.058 0.942 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.106 0.894 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.942 -14.829 -6.431 16.280 hybrid contribution -0.239 0.660 0.698 0.990 sum 1.704 -14.170 -5.733 15.380 Atomic orbital electron populations 1.21803 0.95638 1.01919 1.01369 1.21500 0.96040 0.95214 1.01830 1.21366 0.94479 0.96318 0.97973 0.91869 1.19487 0.95539 0.93545 0.95151 1.21498 1.35139 0.94144 1.04613 0.94654 1.25937 0.97013 0.94917 1.01482 1.70063 1.49611 1.05603 1.34191 0.85743 0.79398 0.79307 0.78739 1.18894 1.17994 1.21035 1.22647 0.93146 0.93287 0.87632 0.93784 1.23274 0.98898 1.00478 0.95957 1.23250 0.97581 1.00562 0.96887 1.23597 0.96368 0.90097 0.93774 1.88467 1.70787 1.39953 1.32932 0.94229 0.92693 0.90983 0.90414 0.92860 0.97564 0.96454 0.92745 0.88759 0.90090 0.90830 0.87244 0.89416 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.54 71.98 0.69 -3.66 16 2 C -0.11 -3.42 4.90 30.60 0.15 -3.27 16 3 C -0.08 -3.32 1.61 -10.79 -0.02 -3.34 16 4 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 5 C 0.00 0.00 3.36 29.85 0.10 0.10 16 6 C -0.52 -30.95 8.98 25.60 0.23 -30.72 16 7 H 0.04 2.30 7.21 -2.91 -0.02 2.28 16 8 C 0.00 0.15 5.47 84.66 0.46 0.61 16 9 N -0.95 -61.90 13.96 21.45 0.30 -61.60 16 10 Si 0.94 47.10 27.38 68.60 1.88 48.98 16 11 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -12.31 6.67 99.48 0.66 -11.65 16 13 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 14 C 0.09 3.49 3.08 31.06 0.10 3.59 16 15 H 0.04 2.08 6.78 -2.39 -0.02 2.06 16 16 C -0.15 -4.05 6.35 31.91 0.20 -3.85 16 17 C -0.15 -3.24 7.16 32.10 0.23 -3.01 16 18 C 0.04 1.00 7.71 72.65 0.56 1.56 16 19 O -0.40 -15.64 9.76 -148.98 -1.45 -17.09 16 20 H 0.04 1.28 6.76 -2.38 -0.02 1.26 16 21 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.08 2.00 6.22 -2.39 -0.01 1.98 16 24 H 0.05 1.78 7.74 -2.38 -0.02 1.76 16 25 H 0.01 0.32 7.12 -2.39 -0.02 0.30 16 26 H 0.02 0.84 5.65 -2.39 -0.01 0.83 16 27 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 28 H 0.09 2.22 6.06 -2.39 -0.01 2.21 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -70.04 257.14 4.44 -65.60 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.02 Total: 6.10 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 2.70 Total: -41.98 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.30 Total: -61.60 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.45 Total: -17.09 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Total: -70.04 4.44 -65.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643427.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.364 kcal (2) G-P(sol) polarization free energy of solvation -70.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds