Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47675 * 2 1 4 4 H 1.08998 * 109.47383 * 177.65018 * 3 2 1 5 5 C 1.52995 * 109.47284 * 297.65512 * 3 2 1 6 6 C 1.50701 * 109.47153 * 295.02193 * 5 3 2 7 7 H 1.08001 * 119.99778 * 354.94861 * 6 5 3 8 8 C 1.37874 * 120.00451 * 174.94511 * 6 5 3 9 9 N 1.31518 * 119.99877 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46653 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47455 * 119.99807 * 10 8 6 13 13 H 1.48497 * 109.47026 * 240.00042 * 10 8 6 14 14 C 1.53002 * 109.46731 * 57.65280 * 3 2 1 15 15 H 1.09004 * 109.87181 * 299.29513 * 14 3 2 16 16 C 1.54094 * 109.88097 * 60.30817 * 14 3 2 17 17 C 1.54813 * 104.18933 * 121.45573 * 16 14 3 18 18 C 1.54997 * 102.09314 * 20.87648 * 17 16 14 19 19 O 1.43744 * 109.87690 * 178.29505 * 14 3 2 20 20 H 1.09001 * 109.47031 * 60.27850 * 1 2 3 21 21 H 1.09000 * 109.46749 * 300.28439 * 1 2 3 22 22 H 1.08997 * 109.47403 * 180.27981 * 1 2 3 23 23 H 1.09003 * 109.47139 * 120.00562 * 2 1 3 24 24 H 1.09000 * 109.47139 * 239.99784 * 2 1 3 25 25 H 1.09002 * 109.47110 * 55.02107 * 5 3 2 26 26 H 1.09000 * 109.47856 * 175.02134 * 5 3 2 27 27 H 0.96998 * 120.00090 * 180.02562 * 9 8 6 28 28 H 1.09000 * 110.48931 * 240.12785 * 16 14 3 29 29 H 1.09003 * 110.48729 * 2.64661 * 16 14 3 30 30 H 1.09001 * 110.91021 * 139.08242 * 17 16 14 31 31 H 1.09004 * 110.90406 * 262.64755 * 17 16 14 32 32 H 1.09001 * 110.61526 * 81.48136 * 18 17 16 33 33 H 1.08995 * 110.61928 * 204.31653 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4426 0.0421 5 6 1.5790 2.1465 -1.2776 6 6 2.2261 1.4943 -2.4722 7 1 2.9608 0.7154 -2.3302 8 6 1.8804 1.8917 -3.7463 9 7 0.9861 2.8404 -3.9193 10 14 2.6820 1.0827 -5.2270 11 1 3.6464 0.0518 -4.7660 12 1 1.6381 0.4428 -6.0671 13 1 3.3985 2.1100 -6.0248 14 6 1.4825 2.1805 1.2187 15 1 0.3933 2.1950 1.1767 16 6 1.9478 1.4833 2.5117 17 6 2.7151 2.5854 3.2821 18 6 2.1542 3.8802 2.6408 19 8 1.9883 3.5256 1.2491 20 1 -0.3633 0.5095 -0.8925 21 1 -0.3633 0.5183 0.8874 22 1 -0.3634 -1.0276 0.0050 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 0.4952 2.0691 -1.3642 26 1 1.8661 3.1972 -1.2375 27 1 0.7426 3.1198 -4.8156 28 1 1.0900 1.1404 3.0902 29 1 2.6081 0.6480 2.2784 30 1 2.4853 2.5475 4.3469 31 1 3.7889 2.5013 3.1145 32 1 1.1941 4.1437 3.0848 33 1 2.8636 4.7006 2.7490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = -72.226599 kcal Electronic energy + Delta-G solvation = -13256.074261 eV Core-core repulsion = 11087.874223 eV Total energy + Delta-G solvation = -2168.200038 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.21350 -35.51584 -32.44010 -31.57736 -28.99377 -27.98079 -24.71933 -22.88281 -22.14239 -20.80520 -18.33674 -16.34515 -15.79492 -15.34639 -15.10905 -14.35162 -13.62366 -13.29277 -12.97059 -12.43420 -12.27556 -11.69160 -11.35843 -11.13825 -11.05364 -10.92630 -10.78443 -10.65887 -10.42057 -10.18656 -9.99461 -9.54955 -9.14430 -8.91437 -8.68866 -8.22339 -5.88520 -3.89036 3.36477 3.43930 3.47623 4.34605 4.54103 4.90320 5.06618 5.26276 5.45864 5.47084 5.58299 5.84101 5.86376 5.90254 5.96013 5.97284 6.08437 6.20554 6.21897 6.44732 6.53897 6.66985 6.91502 7.00059 7.08132 7.31189 7.54331 7.86159 8.03536 8.16516 8.56181 9.18048 9.73033 11.22796 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046511 B = 0.009518 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.860262 B = 2941.032126 C = 3190.338963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C -0.080 4.080 4 H 0.059 0.941 5 C 0.028 3.972 6 C -0.510 4.510 7 H 0.054 0.946 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.080 3.920 15 H 0.064 0.936 16 C -0.152 4.152 17 C -0.155 4.155 18 C 0.042 3.958 19 O -0.362 6.362 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.023 0.977 26 H 0.020 0.980 27 H 0.258 0.742 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -2.571 12.552 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.099 4.099 4 H 0.078 0.922 5 C -0.009 4.009 6 C -0.548 4.548 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.023 3.977 15 H 0.082 0.918 16 C -0.190 4.190 17 C -0.193 4.193 18 C -0.035 4.035 19 O -0.281 6.281 20 H 0.089 0.911 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.759 -2.349 12.226 12.473 hybrid contribution 0.338 -0.496 -0.675 0.903 sum 1.097 -2.845 11.551 11.947 Atomic orbital electron populations 1.21844 0.96795 1.00106 1.02107 1.21428 0.95644 0.96588 1.00680 1.21362 0.99329 0.93945 0.95224 0.92224 1.19142 0.96757 0.95616 0.89381 1.21293 1.22785 1.19747 0.91020 0.92817 1.25001 0.95349 0.95268 0.98904 1.69988 1.32420 1.29489 1.21622 0.86628 0.79300 0.79349 0.83268 1.19856 1.21183 1.21165 1.22979 0.97696 0.81910 0.95163 0.91825 1.23063 1.00245 0.99013 0.96659 1.23117 1.00918 0.95692 0.99553 1.23495 0.99417 0.97012 0.83551 1.89062 1.86314 1.30045 1.22709 0.91060 0.93914 0.94227 0.94244 0.90794 0.95889 0.96195 0.93274 0.91515 0.90326 0.91038 0.90812 0.92955 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.22 37.16 0.34 -2.36 16 2 C -0.11 -1.99 5.26 -26.73 -0.14 -2.14 16 3 C -0.08 -1.70 1.77 -90.62 -0.16 -1.86 16 4 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 5 C 0.03 0.74 4.21 -27.88 -0.12 0.63 16 6 C -0.51 -14.60 8.27 -34.44 -0.28 -14.88 16 7 H 0.05 1.50 7.26 -52.49 -0.38 1.12 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 10 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.08 1.48 2.52 -26.16 -0.07 1.41 16 15 H 0.06 1.20 6.44 -51.93 -0.33 0.86 16 16 C -0.15 -2.19 6.06 -25.20 -0.15 -2.34 16 17 C -0.16 -1.97 7.16 -24.72 -0.18 -2.15 16 18 C 0.04 0.61 7.72 38.21 0.29 0.91 16 19 O -0.36 -7.25 10.54 -35.23 -0.37 -7.62 16 20 H 0.07 1.48 6.40 -51.93 -0.33 1.15 16 21 H 0.04 0.69 6.39 -51.93 -0.33 0.36 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.63 6.62 -51.93 -0.34 0.29 16 24 H 0.07 1.52 6.99 -51.93 -0.36 1.16 16 25 H 0.02 0.64 6.25 -51.93 -0.32 0.32 16 26 H 0.02 0.59 7.61 -51.93 -0.40 0.19 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.12 6.50 -51.93 -0.34 0.78 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 258.09 15.07 3.89 3.89 Total: -1.00 -31.15 258.09 -6.56 -37.71 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.24 Total: -2.99 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -0.56 Total: -21.26 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.37 Total: -7.62 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.15 -6.56 -37.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.513 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds