Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47675 * 2 1 4 4 H 1.08998 * 109.47383 * 177.65018 * 3 2 1 5 5 C 1.52995 * 109.47284 * 297.65512 * 3 2 1 6 6 C 1.50701 * 109.47153 * 295.02193 * 5 3 2 7 7 H 1.08001 * 119.99778 * 354.94861 * 6 5 3 8 8 C 1.37874 * 120.00451 * 174.94511 * 6 5 3 9 9 N 1.31518 * 119.99877 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00423 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46653 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47455 * 119.99807 * 10 8 6 13 13 H 1.48497 * 109.47026 * 240.00042 * 10 8 6 14 14 C 1.53002 * 109.46731 * 57.65280 * 3 2 1 15 15 H 1.09004 * 109.87181 * 299.29513 * 14 3 2 16 16 C 1.54094 * 109.88097 * 60.30817 * 14 3 2 17 17 C 1.54813 * 104.18933 * 121.45573 * 16 14 3 18 18 C 1.54997 * 102.09314 * 20.87648 * 17 16 14 19 19 O 1.43744 * 109.87690 * 178.29505 * 14 3 2 20 20 H 1.09001 * 109.47031 * 60.27850 * 1 2 3 21 21 H 1.09000 * 109.46749 * 300.28439 * 1 2 3 22 22 H 1.08997 * 109.47403 * 180.27981 * 1 2 3 23 23 H 1.09003 * 109.47139 * 120.00562 * 2 1 3 24 24 H 1.09000 * 109.47139 * 239.99784 * 2 1 3 25 25 H 1.09002 * 109.47110 * 55.02107 * 5 3 2 26 26 H 1.09000 * 109.47856 * 175.02134 * 5 3 2 27 27 H 0.96998 * 120.00090 * 180.02562 * 9 8 6 28 28 H 1.09000 * 110.48931 * 240.12785 * 16 14 3 29 29 H 1.09003 * 110.48729 * 2.64661 * 16 14 3 30 30 H 1.09001 * 110.91021 * 139.08242 * 17 16 14 31 31 H 1.09004 * 110.90406 * 262.64755 * 17 16 14 32 32 H 1.09001 * 110.61526 * 81.48136 * 18 17 16 33 33 H 1.08995 * 110.61928 * 204.31653 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1293 1.4426 0.0421 5 6 1.5790 2.1465 -1.2776 6 6 2.2261 1.4943 -2.4722 7 1 2.9608 0.7154 -2.3302 8 6 1.8804 1.8917 -3.7463 9 7 0.9861 2.8404 -3.9193 10 14 2.6820 1.0827 -5.2270 11 1 3.6464 0.0518 -4.7660 12 1 1.6381 0.4428 -6.0671 13 1 3.3985 2.1100 -6.0248 14 6 1.4825 2.1805 1.2187 15 1 0.3933 2.1950 1.1767 16 6 1.9478 1.4833 2.5117 17 6 2.7151 2.5854 3.2821 18 6 2.1542 3.8802 2.6408 19 8 1.9883 3.5256 1.2491 20 1 -0.3633 0.5095 -0.8925 21 1 -0.3633 0.5183 0.8874 22 1 -0.3634 -1.0276 0.0050 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 0.4952 2.0691 -1.3642 26 1 1.8661 3.1972 -1.2375 27 1 0.7426 3.1198 -4.8156 28 1 1.0900 1.1404 3.0902 29 1 2.6081 0.6480 2.2784 30 1 2.4853 2.5475 4.3469 31 1 3.7889 2.5013 3.1145 32 1 1.1941 4.1437 3.0848 33 1 2.8636 4.7006 2.7490 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260643430.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = -91.971032 kcal Electronic energy + Delta-G solvation = -13256.930444 eV Core-core repulsion = 11087.874223 eV Total energy + Delta-G solvation = -2169.056221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.58453 -37.18012 -34.56012 -32.84390 -30.60645 -29.66819 -26.49716 -24.64231 -23.52002 -22.14645 -19.92999 -18.44030 -17.20345 -16.83342 -16.54277 -16.31088 -15.17860 -14.51877 -14.42684 -14.38625 -13.73616 -13.41391 -13.06711 -12.82929 -12.62337 -12.47512 -12.34670 -12.11459 -12.02451 -11.63656 -11.51088 -11.33158 -11.01706 -10.72644 -10.49830 -10.32507 -8.14524 -6.23735 1.38525 1.39243 1.52167 2.42577 3.11068 3.18161 3.77965 3.88897 4.08237 4.20323 4.32538 4.38977 4.48576 4.57302 4.71796 4.85900 4.88538 4.96268 5.01253 5.09773 5.15024 5.22215 5.28942 5.35050 5.51167 5.54768 5.69926 5.85621 5.95742 6.22865 6.32559 6.93427 7.43511 8.97703 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046511 B = 0.009518 C = 0.008774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.860262 B = 2941.032126 C = 3190.338963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.075 4.075 4 H 0.047 0.953 5 C 0.037 3.963 6 C -0.525 4.525 7 H 0.058 0.942 8 C -0.004 4.004 9 N -0.936 5.936 10 Si 0.961 3.039 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.078 3.922 15 H 0.056 0.944 16 C -0.145 4.145 17 C -0.145 4.145 18 C 0.031 3.969 19 O -0.409 6.409 20 H 0.030 0.970 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.051 0.949 25 H -0.001 1.001 26 H -0.025 1.025 27 H 0.260 0.740 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -4.173 14.136 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.093 4.093 4 H 0.066 0.934 5 C 0.000 4.000 6 C -0.563 4.563 7 H 0.077 0.923 8 C -0.201 4.201 9 N -0.577 5.577 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.207 1.207 14 C 0.021 3.979 15 H 0.073 0.927 16 C -0.183 4.183 17 C -0.183 4.183 18 C -0.045 4.045 19 O -0.329 6.329 20 H 0.049 0.951 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.018 0.982 26 H -0.007 1.007 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.407 -3.959 13.831 14.455 hybrid contribution 0.122 0.082 -1.144 1.153 sum 1.529 -3.877 12.687 13.354 Atomic orbital electron populations 1.21775 0.96063 1.01482 1.00995 1.21378 0.96243 0.94688 1.01499 1.21229 0.98578 0.95557 0.93982 0.93438 1.18961 0.95140 0.93576 0.92294 1.21675 1.22823 1.19784 0.92039 0.92336 1.25969 0.95910 0.95838 1.02412 1.70136 1.33970 1.31080 1.22519 0.85463 0.78514 0.78501 0.78970 1.18471 1.20332 1.20746 1.22924 0.97059 0.81915 0.96033 0.92663 1.23033 1.01508 0.99153 0.94567 1.23109 1.00568 0.93473 1.01144 1.23820 1.00832 0.98616 0.81256 1.89021 1.86535 1.30910 1.26455 0.95132 0.92056 0.91553 0.90247 0.92996 0.98248 1.00680 0.93086 0.88910 0.89791 0.87507 0.90821 0.91492 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.22 71.98 0.66 -4.41 16 2 C -0.10 -3.68 5.26 30.59 0.16 -3.52 16 3 C -0.07 -3.22 1.77 -10.80 -0.02 -3.24 16 4 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 5 C 0.04 2.09 4.21 29.85 0.13 2.21 16 6 C -0.53 -30.97 8.27 25.60 0.21 -30.76 16 7 H 0.06 3.31 7.26 -2.91 -0.02 3.29 16 8 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 9 N -0.94 -59.57 13.29 21.45 0.28 -59.29 16 10 Si 0.96 45.95 29.54 68.60 2.03 47.97 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.08 2.85 2.52 30.96 0.08 2.93 16 15 H 0.06 2.07 6.44 -2.39 -0.02 2.06 16 16 C -0.15 -3.70 6.06 31.58 0.19 -3.51 16 17 C -0.15 -3.21 7.16 31.90 0.23 -2.98 16 18 C 0.03 0.84 7.72 72.67 0.56 1.40 16 19 O -0.41 -16.61 10.54 -148.98 -1.57 -18.18 16 20 H 0.03 1.29 6.40 -2.39 -0.02 1.27 16 21 H 0.06 1.88 6.39 -2.39 -0.02 1.86 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 2.29 6.62 -2.39 -0.02 2.28 16 24 H 0.05 2.11 6.99 -2.39 -0.02 2.09 16 25 H 0.00 -0.05 6.25 -2.39 -0.01 -0.06 16 26 H -0.03 -1.61 7.61 -2.39 -0.02 -1.63 16 27 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 2.07 6.50 -2.39 -0.02 2.05 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -70.40 258.09 4.47 -65.93 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.07 Total: 5.25 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 2.66 Total: -41.68 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.28 Total: -59.29 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.57 Total: -18.18 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -70.40 4.47 -65.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643430.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.037 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds