Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46834 * 2 1 4 4 H 1.09001 * 109.47082 * 181.85910 * 3 2 1 5 5 C 1.53000 * 109.46800 * 61.86526 * 3 2 1 6 6 C 1.50691 * 109.47438 * 64.99819 * 5 3 2 7 7 H 1.07999 * 120.00206 * 359.97438 * 6 5 3 8 8 C 1.37883 * 120.00014 * 179.97438 * 6 5 3 9 9 N 1.31513 * 119.99715 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00013 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47376 * 89.99908 * 10 8 6 12 12 H 1.48502 * 109.47157 * 210.00327 * 10 8 6 13 13 H 1.48503 * 109.47097 * 329.99930 * 10 8 6 14 14 C 1.52998 * 109.47427 * 301.86027 * 3 2 1 15 15 H 1.09004 * 110.33033 * 59.62915 * 14 3 2 16 16 C 1.54472 * 110.37503 * 297.37872 * 14 3 2 17 17 C 1.54508 * 104.06409 * 217.18912 * 16 14 3 18 18 C 1.54471 * 104.06265 * 359.97438 * 17 16 14 19 19 O 1.44423 * 110.37171 * 181.99307 * 14 3 2 20 20 H 1.08997 * 109.47897 * 60.05552 * 1 2 3 21 21 H 1.09010 * 109.47023 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47314 * 300.05059 * 1 2 3 23 23 H 1.09006 * 109.46888 * 240.00950 * 2 1 3 24 24 H 1.08999 * 109.47453 * 120.00355 * 2 1 3 25 25 H 1.09003 * 109.46995 * 185.00033 * 5 3 2 26 26 H 1.09007 * 109.47087 * 304.99392 * 5 3 2 27 27 H 0.97005 * 119.99485 * 179.97438 * 9 8 6 28 28 H 1.09005 * 110.51319 * 335.83324 * 16 14 3 29 29 H 1.09002 * 110.51326 * 98.40252 * 16 14 3 30 30 H 1.09002 * 110.51002 * 118.64339 * 17 16 14 31 31 H 1.08998 * 110.51166 * 241.21608 * 17 16 14 32 32 H 1.09003 * 110.37417 * 142.81039 * 18 17 16 33 33 H 1.09003 * 110.37234 * 265.14849 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1294 1.4428 -0.0333 5 6 1.5685 2.1500 1.2721 6 6 2.2066 1.5016 2.4734 7 1 2.8806 0.6679 2.3428 8 6 1.9299 1.9726 3.7394 9 7 2.4865 1.4063 4.7878 10 14 0.7636 3.4140 3.9654 11 1 -0.6242 2.9085 4.1198 12 1 1.1501 4.1780 5.1788 13 1 0.8377 4.3018 2.7772 14 6 1.4920 2.1772 -1.2251 15 1 0.4021 2.1796 -1.2092 16 6 2.0094 1.5186 -2.5231 17 6 2.2504 2.7091 -3.4780 18 6 1.8495 3.9461 -2.6442 19 8 1.9994 3.5287 -1.2694 20 1 -0.3635 0.5129 -0.8904 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3634 0.5146 0.8895 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.8555 3.2008 1.2310 26 1 0.4841 2.0724 1.3504 27 1 2.2921 1.7380 5.6784 28 1 2.9411 0.9848 -2.3355 29 1 1.2593 0.8427 -2.9337 30 1 3.3013 2.7640 -3.7624 31 1 1.6203 2.6224 -4.3631 32 1 2.5148 4.7819 -2.8612 33 1 0.8145 4.2213 -2.8471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260643433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -70.094767 kcal Electronic energy + Delta-G solvation = -13284.077414 eV Core-core repulsion = 11115.969819 eV Total energy + Delta-G solvation = -2168.107595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.30121 -35.68426 -32.39454 -31.68566 -29.25472 -28.41886 -24.94056 -22.84147 -22.08761 -20.63399 -18.43281 -16.75171 -16.04985 -15.34013 -15.21703 -14.19131 -13.78924 -13.44691 -13.11229 -12.57294 -12.25435 -11.99026 -11.53136 -11.35522 -11.28849 -11.08590 -10.74287 -10.63188 -10.41902 -10.20943 -9.68672 -9.61338 -9.31296 -9.18940 -8.87337 -8.42435 -5.94799 -3.90499 3.37824 3.45459 3.53736 4.26703 4.55345 4.84807 4.95931 5.15476 5.35541 5.40406 5.51268 5.73568 5.75153 5.78119 5.87981 5.91779 6.03186 6.04970 6.13516 6.32607 6.42510 6.52540 6.73410 6.82725 6.97092 7.13684 7.31333 7.50142 7.62834 7.91829 8.64498 9.10584 9.69177 11.18703 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040381 B = 0.010834 C = 0.009573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.221461 B = 2583.908146 C = 2924.177079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.067 4.067 4 H 0.068 0.932 5 C -0.009 4.009 6 C -0.510 4.510 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.908 5.908 10 Si 0.875 3.125 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.076 3.924 15 H 0.065 0.935 16 C -0.149 4.149 17 C -0.156 4.156 18 C 0.041 3.959 19 O -0.363 6.363 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.023 0.977 26 H 0.013 0.987 27 H 0.261 0.739 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.285 1.159 -14.964 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.085 4.085 4 H 0.086 0.914 5 C -0.046 4.046 6 C -0.548 4.548 7 H 0.090 0.910 8 C -0.135 4.135 9 N -0.547 5.547 10 Si 0.702 3.298 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.187 1.187 14 C 0.019 3.981 15 H 0.083 0.917 16 C -0.187 4.187 17 C -0.193 4.193 18 C -0.036 4.036 19 O -0.282 6.282 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.187 1.292 -14.590 14.990 hybrid contribution -0.693 0.652 0.043 0.952 sum -3.880 1.944 -14.547 15.181 Atomic orbital electron populations 1.21854 0.96919 1.00445 1.01700 1.21415 0.95466 0.96243 1.01340 1.21093 1.00012 0.93913 0.93511 0.91352 1.19628 0.95976 0.96393 0.92601 1.21153 1.27392 1.16822 0.89419 0.91003 1.25001 0.95901 0.96572 0.96072 1.69921 1.44552 1.41928 0.98323 0.86844 0.81431 0.83707 0.77803 1.20494 1.21573 1.18724 1.23283 0.97565 0.81852 0.95438 0.91725 1.23006 1.02176 0.97827 0.95695 1.22937 1.02037 0.95643 0.98728 1.23336 1.00174 0.97028 0.83077 1.89249 1.84156 1.29562 1.25224 0.93916 0.93859 0.91472 0.93904 0.90210 0.95877 0.96908 0.92951 0.90623 0.91092 0.91068 0.91217 0.89725 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.22 37.16 0.34 -2.22 16 2 C -0.11 -1.96 5.32 -26.73 -0.14 -2.10 16 3 C -0.07 -1.36 1.78 -90.62 -0.16 -1.52 16 4 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 5 C -0.01 -0.22 3.28 -27.89 -0.09 -0.31 16 6 C -0.51 -14.68 8.94 -34.44 -0.31 -14.99 16 7 H 0.07 2.20 7.31 -52.49 -0.38 1.82 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 10 Si 0.87 22.53 27.47 -169.99 -4.67 17.87 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 13 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 14 C 0.08 1.32 2.38 -25.96 -0.06 1.26 16 15 H 0.06 1.10 6.43 -51.93 -0.33 0.77 16 16 C -0.15 -2.06 5.63 -25.17 -0.14 -2.20 16 17 C -0.16 -1.85 7.09 -25.17 -0.18 -2.03 16 18 C 0.04 0.56 7.63 37.93 0.29 0.85 16 19 O -0.36 -6.85 10.73 -35.23 -0.38 -7.22 16 20 H 0.04 0.63 6.39 -51.93 -0.33 0.30 16 21 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 22 H 0.07 1.28 6.36 -51.93 -0.33 0.95 16 23 H 0.04 0.67 7.35 -51.93 -0.38 0.29 16 24 H 0.08 1.65 6.90 -51.93 -0.36 1.30 16 25 H 0.02 0.61 6.70 -51.93 -0.35 0.26 16 26 H 0.01 0.31 5.66 -51.93 -0.29 0.02 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.08 1.06 7.78 -51.93 -0.40 0.65 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 255.81 15.07 3.85 3.85 Total: -1.00 -31.43 255.81 -6.26 -37.69 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.29 Total: -3.02 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -0.55 Total: -21.42 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.77 Total: -27.74 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.38 Total: -7.22 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.43 -6.26 -37.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260643433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.409 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds