Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52999 * 109.47141 * 119.99929 * 2 1 3 14 14 H 1.09002 * 109.51939 * 60.00358 * 13 2 1 15 15 C 1.53173 * 109.52218 * 299.87463 * 13 2 1 16 16 C 1.53190 * 109.03162 * 183.17543 * 15 13 2 17 17 C 1.53094 * 109.20974 * 56.88683 * 16 15 13 18 18 O 1.42899 * 109.41633 * 302.42283 * 17 16 15 19 19 C 1.42903 * 114.09566 * 61.16132 * 18 17 16 20 20 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 22 22 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 23 23 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 24 24 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 25 25 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.54424 * 302.97959 * 15 13 2 27 27 H 1.08997 * 109.54548 * 63.24898 * 15 13 2 28 28 H 1.08995 * 109.46939 * 296.98691 * 16 15 13 29 29 H 1.08993 * 109.57787 * 176.85209 * 16 15 13 30 30 H 1.09006 * 109.47735 * 182.44326 * 17 16 15 31 31 H 1.08996 * 109.48523 * 62.40944 * 17 16 15 32 32 H 1.09004 * 109.47822 * 178.85823 * 19 18 17 33 33 H 1.08995 * 109.49306 * 58.83332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0400 -0.7212 1.2492 14 1 1.6771 -1.7491 1.2500 15 6 1.5326 0.0018 2.5007 16 6 2.1139 -0.6814 3.7425 17 6 3.6420 -0.6808 3.6489 18 8 4.0446 -1.3420 2.4477 19 6 3.5709 -0.7191 1.2520 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -1.7197 -1.2952 24 1 3.1263 -0.7994 -1.2057 25 1 2.9221 -1.8424 -4.7319 26 1 1.8529 1.0434 2.4751 27 1 0.4442 -0.0457 2.5332 28 1 1.7526 -1.7084 3.7947 29 1 1.8036 -0.1401 4.6361 30 1 4.0591 -1.2043 4.5092 31 1 4.0052 0.3468 3.6374 32 1 3.9367 -1.2702 0.3856 33 1 3.9331 0.3080 1.2089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668662.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -81.600465 kcal Electronic energy + Delta-G solvation = -13120.091424 eV Core-core repulsion = 10951.484905 eV Total energy + Delta-G solvation = -2168.606519 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.20235 -35.70707 -33.00124 -31.96653 -29.40386 -27.10754 -24.93324 -23.40505 -22.61071 -20.03209 -18.98351 -16.50496 -15.76449 -15.61078 -14.56091 -14.51964 -13.91882 -13.40196 -13.00939 -12.79459 -12.30033 -12.11866 -11.50836 -11.21228 -11.00853 -10.92379 -10.77798 -10.59945 -10.49197 -10.23837 -9.86651 -9.70563 -9.18711 -8.91613 -8.83391 -8.30599 -5.96674 -3.98162 3.34345 3.39130 3.41198 4.22604 4.48068 5.04147 5.11289 5.14685 5.34807 5.39026 5.49841 5.72969 5.79221 5.94295 5.99596 6.03703 6.11818 6.24037 6.31655 6.40023 6.55279 6.59765 6.67658 7.03195 7.10764 7.20332 7.54916 7.70509 7.85742 8.03205 8.46945 9.07981 9.65096 11.14540 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060016 B = 0.008272 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.432636 B = 3384.054850 C = 3682.859115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 C -0.115 4.115 14 H 0.072 0.928 15 C -0.118 4.118 16 C -0.156 4.156 17 C 0.060 3.940 18 O -0.388 6.388 19 C 0.064 3.936 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.060 0.940 23 H 0.016 0.984 24 H 0.019 0.981 25 H 0.260 0.740 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 2.559 12.315 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.012 4.012 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.134 4.134 14 H 0.090 0.910 15 C -0.156 4.156 16 C -0.193 4.193 17 C -0.017 4.017 18 O -0.307 6.307 19 C -0.012 4.012 20 H 0.063 0.937 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.745 2.275 12.176 12.409 hybrid contribution -0.478 0.737 -0.939 1.286 sum -1.223 3.012 11.237 11.698 Atomic orbital electron populations 1.21744 0.96315 1.00791 1.00137 1.21179 0.95180 0.98986 0.94527 0.92629 1.19206 0.96200 0.95494 0.90303 1.21223 1.34808 1.08314 0.91123 0.92728 1.25017 0.95332 0.95079 0.99050 1.69955 1.38917 1.21129 1.23498 0.86704 0.78853 0.80124 0.82588 1.21344 1.20333 1.20333 1.21846 0.95755 1.00487 0.95284 0.90967 1.21711 1.00641 0.99129 0.94080 1.22201 0.96813 1.01711 0.98611 1.22493 0.94019 0.97037 0.88135 1.87921 1.74682 1.54036 1.14054 1.22830 0.93769 0.97845 0.86755 0.93714 0.94859 0.92061 0.96575 0.96323 0.93012 0.92292 0.91492 0.91374 0.91659 0.89710 0.93725 0.87662 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.66 37.16 0.32 -2.18 16 2 C -0.08 -1.62 1.93 -90.62 -0.17 -1.80 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.02 0.63 4.23 -27.89 -0.12 0.51 16 5 C -0.52 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.05 1.48 7.06 -52.49 -0.37 1.11 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.11 -2.02 1.97 -90.48 -0.18 -2.20 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.12 -1.70 4.87 -26.54 -0.13 -1.83 16 16 C -0.16 -1.96 6.13 -26.58 -0.16 -2.12 16 17 C 0.06 0.80 6.84 37.21 0.25 1.05 16 18 O -0.39 -6.62 10.77 -35.23 -0.38 -6.99 16 19 C 0.06 1.14 5.71 37.20 0.21 1.35 16 20 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.03 0.53 6.51 -51.92 -0.34 0.19 16 22 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.50 6.24 -51.93 -0.32 0.17 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.93 6.62 -51.93 -0.34 0.58 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 2.06 6.47 -51.93 -0.34 1.73 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -29.60 258.69 -6.56 -36.17 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.44 Total: -3.16 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -0.36 Total: -20.40 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.38 Total: -6.99 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.60 -6.56 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668662.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.435 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds