Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52999 * 109.47141 * 119.99929 * 2 1 3 14 14 H 1.09002 * 109.51939 * 60.00358 * 13 2 1 15 15 C 1.53173 * 109.52218 * 299.87463 * 13 2 1 16 16 C 1.53190 * 109.03162 * 183.17543 * 15 13 2 17 17 C 1.53094 * 109.20974 * 56.88683 * 16 15 13 18 18 O 1.42899 * 109.41633 * 302.42283 * 17 16 15 19 19 C 1.42903 * 114.09566 * 61.16132 * 18 17 16 20 20 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 22 22 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 23 23 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 24 24 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 25 25 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.54424 * 302.97959 * 15 13 2 27 27 H 1.08997 * 109.54548 * 63.24898 * 15 13 2 28 28 H 1.08995 * 109.46939 * 296.98691 * 16 15 13 29 29 H 1.08993 * 109.57787 * 176.85209 * 16 15 13 30 30 H 1.09006 * 109.47735 * 182.44326 * 17 16 15 31 31 H 1.08996 * 109.48523 * 62.40944 * 17 16 15 32 32 H 1.09004 * 109.47822 * 178.85823 * 19 18 17 33 33 H 1.08995 * 109.49306 * 58.83332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0400 -0.7212 1.2492 14 1 1.6771 -1.7491 1.2500 15 6 1.5326 0.0018 2.5007 16 6 2.1139 -0.6814 3.7425 17 6 3.6420 -0.6808 3.6489 18 8 4.0446 -1.3420 2.4477 19 6 3.5709 -0.7191 1.2520 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -1.7197 -1.2952 24 1 3.1263 -0.7994 -1.2057 25 1 2.9221 -1.8424 -4.7319 26 1 1.8529 1.0434 2.4751 27 1 0.4442 -0.0457 2.5332 28 1 1.7526 -1.7084 3.7947 29 1 1.8036 -0.1401 4.6361 30 1 4.0591 -1.2043 4.5092 31 1 4.0052 0.3468 3.6374 32 1 3.9367 -1.2702 0.3856 33 1 3.9331 0.3080 1.2089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668662.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -99.442079 kcal Electronic energy + Delta-G solvation = -13120.865095 eV Core-core repulsion = 10951.484905 eV Total energy + Delta-G solvation = -2169.380190 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51308 -37.29696 -34.80474 -33.47200 -30.90221 -28.96257 -26.41249 -24.91782 -24.20684 -21.34062 -20.59144 -18.53433 -17.08692 -16.95764 -16.56311 -15.83381 -15.12899 -14.96397 -14.52790 -14.36308 -13.95120 -13.52752 -13.32141 -12.82282 -12.76830 -12.53713 -12.22555 -12.15038 -11.95665 -11.78278 -11.48816 -11.32085 -10.92316 -10.69124 -10.51647 -10.23223 -8.16315 -6.25769 1.39835 1.42426 1.50172 2.42291 2.99952 3.16892 3.88027 3.89974 3.98654 4.09502 4.32185 4.45694 4.49381 4.58372 4.74670 4.77576 4.86149 4.93285 5.02024 5.05762 5.15985 5.22166 5.27130 5.45117 5.45999 5.50507 5.60740 5.84176 5.90601 6.27522 6.34714 6.90960 7.42357 8.95248 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060016 B = 0.008272 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.432636 B = 3384.054850 C = 3682.859115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 H 0.057 0.943 4 C 0.030 3.970 5 C -0.532 4.532 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.267 1.267 13 C -0.109 4.109 14 H 0.056 0.944 15 C -0.114 4.114 16 C -0.150 4.150 17 C 0.049 3.951 18 O -0.408 6.408 19 C 0.069 3.931 20 H 0.038 0.962 21 H 0.070 0.930 22 H 0.044 0.956 23 H -0.016 1.016 24 H -0.004 1.004 25 H 0.261 0.739 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 4.106 13.671 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 H 0.075 0.925 4 C -0.007 4.007 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.211 1.211 11 H -0.192 1.192 12 H -0.192 1.192 13 C -0.128 4.128 14 H 0.074 0.926 15 C -0.151 4.151 16 C -0.188 4.188 17 C -0.027 4.027 18 O -0.327 6.327 19 C -0.007 4.007 20 H 0.057 0.943 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.002 0.998 24 H 0.014 0.986 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.669 3.832 13.552 14.182 hybrid contribution -0.154 0.223 -1.304 1.332 sum -1.823 4.054 12.247 13.029 Atomic orbital electron populations 1.21681 0.94890 1.00748 1.01114 1.21031 0.96318 0.98412 0.93350 0.92504 1.19101 0.94686 0.94286 0.92655 1.21665 1.34487 1.08630 0.92207 0.92057 1.25958 0.95303 0.96082 1.02658 1.70104 1.40270 1.22936 1.24285 0.85577 0.78905 0.78802 0.78238 1.21114 1.19248 1.19216 1.21726 0.95459 0.99737 0.95859 0.92554 1.21689 1.01317 0.99242 0.92887 1.22182 0.95953 1.01766 0.98857 1.22838 0.94913 0.97884 0.87038 1.87889 1.75081 1.54875 1.14860 1.22593 0.93997 0.97510 0.86614 0.94282 0.91143 0.93733 0.99798 0.98591 0.92990 0.91357 0.90371 0.91806 0.88357 0.87303 0.92534 0.90927 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.66 71.98 0.62 -4.02 16 2 C -0.07 -2.93 1.93 -10.80 -0.02 -2.95 16 3 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.03 1.56 4.23 29.85 0.13 1.69 16 5 C -0.53 -30.17 8.41 25.60 0.22 -29.96 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C -0.11 -3.78 1.97 -10.71 -0.02 -3.80 16 14 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.11 -2.95 4.87 30.72 0.15 -2.80 16 16 C -0.15 -3.25 6.13 30.69 0.19 -3.07 16 17 C 0.05 1.17 6.84 72.01 0.49 1.66 16 18 O -0.41 -13.63 10.77 -148.98 -1.60 -15.24 16 19 C 0.07 2.50 5.71 72.01 0.41 2.91 16 20 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.07 2.04 6.51 -2.38 -0.02 2.02 16 22 H 0.04 1.75 6.95 -2.39 -0.02 1.74 16 23 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 24 H 0.00 -0.24 6.24 -2.39 -0.01 -0.25 16 25 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 26 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.08 1.87 6.62 -2.39 -0.02 1.85 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 3.04 6.47 -2.38 -0.02 3.03 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.71 258.69 4.39 -60.32 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.06 Total: 5.77 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 2.63 Total: -40.03 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.28 Total: -57.55 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.60 Total: -15.24 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.71 4.39 -60.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668662.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.124 kcal (2) G-P(sol) polarization free energy of solvation -64.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds