Wall clock time and date at job start Mon Mar 30 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47559 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47225 * 120.00279 * 9 7 5 12 12 H 1.48505 * 109.47115 * 239.99990 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 H 1.09007 * 109.52456 * 299.87983 * 13 2 1 15 15 C 1.53185 * 109.51950 * 60.00165 * 13 2 1 16 16 C 1.53178 * 109.03730 * 176.88815 * 15 13 2 17 17 C 1.53093 * 109.16293 * 303.02072 * 16 15 13 18 18 O 1.42905 * 109.41469 * 57.60671 * 17 16 15 19 19 C 1.42900 * 114.09718 * 298.84358 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 24 24 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 25 25 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.54324 * 296.75408 * 15 13 2 27 27 H 1.08994 * 109.54552 * 56.93363 * 15 13 2 28 28 H 1.08999 * 109.52322 * 62.92398 * 16 15 13 29 29 H 1.08994 * 109.52728 * 183.04996 * 16 15 13 30 30 H 1.08998 * 109.48188 * 177.59368 * 17 16 15 31 31 H 1.09001 * 109.47947 * 297.62588 * 17 16 15 32 32 H 1.09000 * 109.47965 * 301.17237 * 19 18 17 33 33 H 1.09001 * 109.47560 * 181.14578 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.7403 1.7733 4.8435 11 1 0.6433 -0.2871 6.1180 12 1 2.7154 0.9668 5.9970 13 6 2.0400 -0.7213 -1.2492 14 1 1.6789 -1.7498 -1.2489 15 6 1.5301 -0.0001 -2.5007 16 6 2.1099 -0.6840 -3.7426 17 6 3.6381 -0.6794 -3.6515 18 8 4.0444 -1.3381 -2.4501 19 6 3.5708 -0.7152 -1.2544 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6054 -1.7199 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 2.9227 -1.8423 4.7318 26 1 0.4416 -0.0495 -2.5320 27 1 1.8472 1.0424 -2.4755 28 1 1.7512 -1.7120 -3.7933 29 1 1.7958 -0.1443 -4.6359 30 1 4.0552 -1.2026 -4.5119 31 1 3.9986 0.3493 -3.6417 32 1 3.9304 0.3130 -1.2133 33 1 3.9396 -1.2643 -0.3880 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:31 Heat of formation + Delta-G solvation = -81.677745 kcal Electronic energy + Delta-G solvation = -13120.051313 eV Core-core repulsion = 10951.441442 eV Total energy + Delta-G solvation = -2168.609871 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20372 -35.70749 -33.00275 -31.96799 -29.40510 -27.10826 -24.93411 -23.40582 -22.61362 -20.03450 -18.98519 -16.50840 -15.76528 -15.61411 -14.55995 -14.51798 -13.91775 -13.39699 -13.01360 -12.79800 -12.30290 -12.12629 -11.51280 -11.20744 -11.01206 -10.94669 -10.75243 -10.60578 -10.49848 -10.22154 -9.86399 -9.70999 -9.18390 -8.91447 -8.82519 -8.31373 -5.97123 -3.98454 3.31951 3.39725 3.43291 4.22508 4.47937 5.04293 5.11021 5.14652 5.34763 5.38827 5.49792 5.72948 5.79157 5.94184 5.99585 6.03624 6.11740 6.23976 6.31682 6.39934 6.55193 6.59689 6.67576 7.03157 7.10738 7.20262 7.54848 7.70776 7.85574 8.02980 8.46783 9.08167 9.64983 11.14164 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060042 B = 0.008270 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.227198 B = 3384.941244 C = 3683.381647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.024 3.976 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.115 4.115 14 H 0.072 0.928 15 C -0.118 4.118 16 C -0.156 4.156 17 C 0.060 3.940 18 O -0.388 6.388 19 C 0.064 3.936 20 H 0.033 0.967 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.016 0.984 24 H 0.019 0.981 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.955 2.581 -12.347 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.013 4.013 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.134 4.134 14 H 0.090 0.910 15 C -0.156 4.156 16 C -0.193 4.193 17 C -0.017 4.017 18 O -0.307 6.307 19 C -0.012 4.012 20 H 0.052 0.948 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.768 2.304 -12.213 12.452 hybrid contribution -0.464 0.715 0.950 1.276 sum -1.233 3.019 -11.263 11.725 Atomic orbital electron populations 1.21745 0.96315 1.00789 1.00147 1.21180 0.95183 0.98983 0.94523 0.92627 1.19221 0.96211 0.95509 0.90338 1.21297 1.34626 1.08287 0.91093 0.92615 1.25020 0.95355 0.95079 0.99079 1.69972 1.39055 1.21175 1.23285 0.86593 0.78260 0.80114 0.83374 1.19820 1.21101 1.21085 1.21849 0.95742 1.00497 0.95281 0.90960 1.21712 1.00650 0.99131 0.94088 1.22199 0.96810 1.01706 0.98611 1.22493 0.93999 0.97061 0.88130 1.87921 1.74531 1.54198 1.14043 1.22827 0.93785 0.97827 0.86756 0.94849 0.92058 0.93710 0.96562 0.96316 0.93128 0.91511 0.92282 0.91364 0.91659 0.89711 0.93725 0.93589 0.87671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.65 37.16 0.32 -2.18 16 2 C -0.08 -1.62 1.93 -90.62 -0.17 -1.79 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.02 0.61 4.24 -27.88 -0.12 0.49 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 C -0.11 -2.02 1.97 -90.48 -0.18 -2.19 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.12 -1.71 4.86 -26.54 -0.13 -1.84 16 16 C -0.16 -1.95 6.14 -26.59 -0.16 -2.12 16 17 C 0.06 0.80 6.84 37.21 0.25 1.05 16 18 O -0.39 -6.61 10.77 -35.23 -0.38 -6.99 16 19 C 0.06 1.14 5.71 37.20 0.21 1.35 16 20 H 0.03 0.53 6.51 -51.93 -0.34 0.19 16 21 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.50 6.24 -51.93 -0.32 0.17 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.07 0.92 6.62 -51.93 -0.34 0.58 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.11 2.06 6.47 -51.93 -0.34 1.72 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -29.64 258.69 -6.56 -36.20 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.44 Total: -3.23 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -0.36 Total: -20.38 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.38 Total: -6.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.64 -6.56 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.473 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds