Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47069 * 2 1 4 4 C 1.53002 * 109.46855 * 119.99890 * 2 1 3 5 5 C 1.50704 * 109.47037 * 294.99649 * 4 2 1 6 6 H 1.07998 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99656 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00393 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47199 * 90.00022 * 9 7 5 11 11 H 1.48498 * 109.46968 * 209.99741 * 9 7 5 12 12 H 1.48497 * 109.47091 * 329.99808 * 9 7 5 13 13 C 1.52999 * 109.47070 * 239.99725 * 2 1 3 14 14 H 1.09002 * 109.52356 * 300.00196 * 13 2 1 15 15 C 1.53185 * 109.57233 * 179.84318 * 13 2 1 16 16 C 1.53183 * 109.03189 * 183.08282 * 15 13 2 17 17 C 1.53089 * 109.16135 * 56.98342 * 16 15 13 18 18 O 1.42896 * 109.41625 * 302.38470 * 17 16 15 19 19 C 1.42900 * 114.09793 * 61.16321 * 18 17 16 20 20 H 1.09004 * 109.47577 * 60.00210 * 1 2 3 21 21 H 1.09002 * 109.47528 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47765 * 300.00132 * 1 2 3 23 23 H 1.08993 * 109.47185 * 55.00263 * 4 2 1 24 24 H 1.09001 * 109.47028 * 174.99934 * 4 2 1 25 25 H 0.96993 * 120.00018 * 180.02562 * 8 7 5 26 26 H 1.08993 * 109.54147 * 302.94797 * 15 13 2 27 27 H 1.08994 * 109.54148 * 63.21891 * 15 13 2 28 28 H 1.08993 * 109.52144 * 297.07522 * 16 15 13 29 29 H 1.09004 * 109.51827 * 176.88441 * 16 15 13 30 30 H 1.09010 * 109.47660 * 182.40651 * 17 16 15 31 31 H 1.09000 * 109.49364 * 62.37905 * 17 16 15 32 32 H 1.08999 * 109.48607 * 178.86157 * 19 18 17 33 33 H 1.08998 * 109.49071 * 58.82892 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4016 3.7283 8 7 2.6762 -1.5187 3.8513 9 14 1.4984 0.5629 5.2496 10 1 0.1714 0.0937 5.7233 11 1 2.5079 0.3535 6.3184 12 1 1.4225 2.0080 4.9165 13 6 2.0399 -0.7213 -1.2492 14 1 1.6770 -1.7491 -1.2500 15 6 3.5718 -0.7192 -1.2535 16 6 4.0685 -1.3754 -2.5455 17 6 3.4831 -0.6275 -3.7462 18 8 2.0566 -0.6406 -3.6645 19 6 1.5329 0.0013 -2.5001 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.6053 -1.7197 1.2952 24 1 3.1262 -0.7995 1.2057 25 1 2.9234 -1.8416 4.7318 26 1 3.9351 0.3071 -1.2027 27 1 3.9395 -1.2806 -0.3947 28 1 3.7466 -2.4163 -2.5725 29 1 5.1569 -1.3286 -2.5826 30 1 3.7989 -1.1162 -4.6680 31 1 3.8381 0.4031 -3.7411 32 1 0.4438 -0.0344 -2.5240 33 1 1.8622 1.0401 -2.4783 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -81.830269 kcal Electronic energy + Delta-G solvation = -13118.012815 eV Core-core repulsion = 10949.396330 eV Total energy + Delta-G solvation = -2168.616484 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.23155 -35.73102 -32.82173 -32.15766 -29.41113 -27.04990 -24.66960 -24.05001 -22.20370 -20.07733 -18.97307 -16.53411 -15.80514 -15.67137 -14.58186 -14.43423 -13.89356 -13.49706 -12.94187 -12.75082 -12.29681 -12.09054 -11.64225 -11.29036 -10.96617 -10.88729 -10.77600 -10.57923 -10.33634 -10.14745 -9.89064 -9.61473 -9.47582 -8.92578 -8.73765 -8.30794 -5.97388 -3.98493 3.32449 3.38936 3.41910 4.12716 4.47674 5.10685 5.18229 5.20336 5.36202 5.38491 5.49029 5.72212 5.76239 5.89780 5.99008 6.04576 6.14770 6.26388 6.34001 6.47615 6.57783 6.65333 6.74052 7.03308 7.09831 7.20963 7.45692 7.71816 7.87344 8.03354 8.46991 9.08076 9.64754 11.13927 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060760 B = 0.008215 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.719672 B = 3407.587950 C = 3701.937166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.115 4.115 14 H 0.072 0.928 15 C -0.118 4.118 16 C -0.156 4.156 17 C 0.062 3.938 18 O -0.390 6.390 19 C 0.064 3.936 20 H 0.032 0.968 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.259 0.741 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 2.022 -11.427 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.133 4.133 14 H 0.090 0.910 15 C -0.155 4.155 16 C -0.194 4.194 17 C -0.015 4.015 18 O -0.309 6.309 19 C -0.013 4.013 20 H 0.051 0.949 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.608 1.826 -11.434 11.595 hybrid contribution -0.007 0.552 1.240 1.357 sum 0.601 2.378 -10.194 10.485 Atomic orbital electron populations 1.21787 0.96430 1.00921 1.00181 1.21181 0.94936 0.99037 0.94736 0.92630 1.19178 0.96347 0.95324 0.90135 1.21279 1.34579 1.08308 0.91151 0.92683 1.25015 0.95346 0.95101 0.99055 1.69961 1.39075 1.21231 1.23336 0.86650 0.78235 0.80422 0.83029 1.20740 1.21307 1.19955 1.21848 0.95472 1.00690 0.95337 0.90990 1.21681 0.95709 1.00912 0.97210 1.22216 1.00372 1.00730 0.96074 1.22522 0.81593 0.99224 0.98181 1.87869 1.20245 1.79426 1.43386 1.22795 0.98804 0.95053 0.84615 0.94898 0.93560 0.91964 0.96733 0.96193 0.93114 0.92291 0.90258 0.91344 0.91454 0.89662 0.93664 0.88968 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.65 37.15 0.32 -2.23 16 2 C -0.08 -1.62 1.93 -90.62 -0.17 -1.80 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.69 4.24 -27.88 -0.12 0.57 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C -0.11 -2.01 1.97 -90.48 -0.18 -2.19 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 15 C -0.12 -1.96 4.87 -26.54 -0.13 -2.09 16 16 C -0.16 -2.16 6.14 -26.59 -0.16 -2.32 16 17 C 0.06 0.81 6.84 37.20 0.25 1.06 16 18 O -0.39 -6.12 10.76 -35.23 -0.38 -6.50 16 19 C 0.06 0.99 5.70 37.21 0.21 1.20 16 20 H 0.03 0.51 6.49 -51.93 -0.34 0.18 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.53 6.26 -51.93 -0.33 0.21 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.48 6.52 -51.93 -0.34 1.14 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.36 6.57 -51.93 -0.34 1.01 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -29.66 258.69 -6.56 -36.22 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.44 Total: -3.12 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -0.36 Total: -20.98 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.38 Total: -6.50 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.66 -6.56 -36.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.606 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds