Wall clock time and date at job start Mon Mar 30 2020 02:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47069 * 2 1 4 4 C 1.53002 * 109.46855 * 119.99890 * 2 1 3 5 5 C 1.50704 * 109.47037 * 294.99649 * 4 2 1 6 6 H 1.07998 * 119.99915 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99656 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00393 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47199 * 90.00022 * 9 7 5 11 11 H 1.48498 * 109.46968 * 209.99741 * 9 7 5 12 12 H 1.48497 * 109.47091 * 329.99808 * 9 7 5 13 13 C 1.52999 * 109.47070 * 239.99725 * 2 1 3 14 14 H 1.09002 * 109.52356 * 300.00196 * 13 2 1 15 15 C 1.53185 * 109.57233 * 179.84318 * 13 2 1 16 16 C 1.53183 * 109.03189 * 183.08282 * 15 13 2 17 17 C 1.53089 * 109.16135 * 56.98342 * 16 15 13 18 18 O 1.42896 * 109.41625 * 302.38470 * 17 16 15 19 19 C 1.42900 * 114.09793 * 61.16321 * 18 17 16 20 20 H 1.09004 * 109.47577 * 60.00210 * 1 2 3 21 21 H 1.09002 * 109.47528 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47765 * 300.00132 * 1 2 3 23 23 H 1.08993 * 109.47185 * 55.00263 * 4 2 1 24 24 H 1.09001 * 109.47028 * 174.99934 * 4 2 1 25 25 H 0.96993 * 120.00018 * 180.02562 * 8 7 5 26 26 H 1.08993 * 109.54147 * 302.94797 * 15 13 2 27 27 H 1.08994 * 109.54148 * 63.21891 * 15 13 2 28 28 H 1.08993 * 109.52144 * 297.07522 * 16 15 13 29 29 H 1.09004 * 109.51827 * 176.88441 * 16 15 13 30 30 H 1.09010 * 109.47660 * 182.40651 * 17 16 15 31 31 H 1.09000 * 109.49364 * 62.37905 * 17 16 15 32 32 H 1.08999 * 109.48607 * 178.86157 * 19 18 17 33 33 H 1.08998 * 109.49071 * 58.82892 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4016 3.7283 8 7 2.6762 -1.5187 3.8513 9 14 1.4984 0.5629 5.2496 10 1 0.1714 0.0937 5.7233 11 1 2.5079 0.3535 6.3184 12 1 1.4225 2.0080 4.9165 13 6 2.0399 -0.7213 -1.2492 14 1 1.6770 -1.7491 -1.2500 15 6 3.5718 -0.7192 -1.2535 16 6 4.0685 -1.3754 -2.5455 17 6 3.4831 -0.6275 -3.7462 18 8 2.0566 -0.6406 -3.6645 19 6 1.5329 0.0013 -2.5001 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.6053 -1.7197 1.2952 24 1 3.1262 -0.7995 1.2057 25 1 2.9234 -1.8416 4.7318 26 1 3.9351 0.3071 -1.2027 27 1 3.9395 -1.2806 -0.3947 28 1 3.7466 -2.4163 -2.5725 29 1 5.1569 -1.3286 -2.5826 30 1 3.7989 -1.1162 -4.6680 31 1 3.8381 0.4031 -3.7411 32 1 0.4438 -0.0344 -2.5240 33 1 1.8622 1.0401 -2.4783 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:33 Heat of formation + Delta-G solvation = -99.620402 kcal Electronic energy + Delta-G solvation = -13118.784253 eV Core-core repulsion = 10949.396330 eV Total energy + Delta-G solvation = -2169.387923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.50693 -37.30091 -34.69955 -33.61682 -30.95586 -28.82567 -26.30328 -25.38226 -23.86355 -21.41476 -20.58454 -18.55617 -17.06008 -17.01258 -16.47347 -15.76247 -15.27710 -14.96559 -14.55380 -14.33909 -13.86028 -13.56153 -13.41455 -12.89645 -12.72732 -12.60266 -12.22684 -12.08753 -11.98738 -11.71044 -11.45689 -11.26654 -10.93580 -10.84230 -10.53113 -10.17744 -8.17179 -6.26270 1.39343 1.40151 1.51009 2.41576 3.01455 3.15995 3.85723 3.91599 3.98377 4.07857 4.33509 4.45620 4.50765 4.54994 4.72941 4.75444 4.81038 4.90388 5.03279 5.06888 5.13898 5.24875 5.29732 5.43019 5.43947 5.49604 5.61360 5.85042 5.90491 6.28891 6.32746 6.90640 7.41826 8.94593 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060760 B = 0.008215 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.719672 B = 3407.587950 C = 3701.937166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 H 0.056 0.944 4 C 0.033 3.967 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C -0.110 4.110 14 H 0.055 0.945 15 C -0.119 4.119 16 C -0.151 4.151 17 C 0.058 3.942 18 O -0.402 6.402 19 C 0.071 3.929 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.045 0.955 23 H -0.018 1.018 24 H -0.003 1.003 25 H 0.261 0.739 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 3.389 -12.512 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.129 4.129 14 H 0.074 0.926 15 C -0.157 4.157 16 C -0.188 4.188 17 C -0.018 4.018 18 O -0.321 6.321 19 C -0.005 4.005 20 H 0.089 0.911 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.000 1.000 24 H 0.015 0.985 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.218 3.202 -12.534 12.938 hybrid contribution 0.157 0.087 1.564 1.575 sum 0.376 3.288 -10.970 11.458 Atomic orbital electron populations 1.21733 0.95044 1.00886 1.01215 1.21028 0.96091 0.98458 0.93581 0.92528 1.19055 0.94765 0.94089 0.92445 1.21708 1.34309 1.08616 0.92250 0.92098 1.25948 0.95312 0.96110 1.02634 1.70103 1.40358 1.22984 1.24182 0.85527 0.77966 0.79329 0.78723 1.19973 1.20977 1.18707 1.21751 0.96015 0.99739 0.95393 0.92602 1.21647 0.95278 1.00958 0.97813 1.22189 1.01717 1.00128 0.94803 1.22740 0.80225 1.00218 0.98634 1.87863 1.21798 1.79533 1.42897 1.22707 0.99404 0.95137 0.83281 0.91134 0.94149 0.93585 0.99978 0.98506 0.93022 0.91895 0.93458 0.92010 0.89372 0.87015 0.92297 0.87952 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 8.65 71.98 0.62 -4.19 16 2 C -0.07 -2.95 1.93 -10.79 -0.02 -2.98 16 3 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.03 1.76 4.24 29.85 0.13 1.89 16 5 C -0.53 -30.10 8.41 25.60 0.22 -29.89 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 13 C -0.11 -3.82 1.97 -10.70 -0.02 -3.84 16 14 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 15 C -0.12 -3.98 4.87 30.72 0.15 -3.83 16 16 C -0.15 -3.93 6.14 30.69 0.19 -3.74 16 17 C 0.06 1.34 6.84 72.01 0.49 1.84 16 18 O -0.40 -11.50 10.76 -148.98 -1.60 -13.10 16 19 C 0.07 2.03 5.70 72.01 0.41 2.44 16 20 H 0.07 2.04 6.49 -2.38 -0.02 2.02 16 21 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.05 1.81 6.95 -2.39 -0.02 1.79 16 23 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 24 H 0.00 -0.19 6.26 -2.39 -0.01 -0.20 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.85 6.52 -2.39 -0.02 1.83 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 2.02 8.14 -2.38 -0.02 2.01 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 2.70 6.57 -2.39 -0.02 2.68 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.23 258.69 4.39 -59.84 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.06 Total: 5.92 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 2.63 Total: -42.01 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.28 Total: -57.34 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.60 Total: -13.10 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.23 4.39 -59.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.783 kcal (2) G-P(sol) polarization free energy of solvation -64.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds