Wall clock time and date at job start Mon Mar 30 2020 02:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47076 * 2 1 4 4 C 1.52996 * 109.47037 * 240.00112 * 2 1 3 5 5 C 1.50702 * 109.46996 * 65.00051 * 4 2 1 6 6 H 1.08003 * 120.00181 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99723 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99763 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47089 * 90.00558 * 9 7 5 11 11 H 1.48497 * 109.47231 * 209.99936 * 9 7 5 12 12 H 1.48492 * 109.47356 * 330.00429 * 9 7 5 13 13 C 1.53000 * 109.46883 * 120.00347 * 2 1 3 14 14 H 1.09002 * 109.52286 * 59.99897 * 13 2 1 15 15 C 1.53177 * 109.51896 * 180.12575 * 13 2 1 16 16 C 1.53311 * 108.96735 * 176.89083 * 15 13 2 17 17 C 1.53100 * 109.19441 * 303.05955 * 16 15 13 18 18 O 1.42904 * 109.41581 * 57.60519 * 17 16 15 19 19 C 1.42899 * 114.09711 * 298.84173 * 18 17 16 20 20 H 1.09003 * 109.47070 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47188 * 299.99688 * 1 2 3 22 22 H 1.08995 * 109.47380 * 59.99383 * 1 2 3 23 23 H 1.08999 * 109.47320 * 184.99906 * 4 2 1 24 24 H 1.08999 * 109.47128 * 305.00259 * 4 2 1 25 25 H 0.97003 * 119.99857 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.54414 * 296.81428 * 15 13 2 27 27 H 1.09002 * 109.54680 * 57.08371 * 15 13 2 28 28 H 1.08992 * 109.51110 * 183.14032 * 16 15 13 29 29 H 1.08999 * 109.55790 * 62.99958 * 16 15 13 30 30 H 1.09002 * 109.47233 * 297.62202 * 17 16 15 31 31 H 1.08999 * 109.48998 * 177.59482 * 17 16 15 32 32 H 1.08999 * 109.48542 * 301.17828 * 19 18 17 33 33 H 1.09000 * 109.48175 * 181.14161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4765 6 1 1.0799 0.9743 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 1.6439 0.2769 -4.7994 9 14 2.9626 -1.9887 -3.9029 10 1 2.0233 -3.1331 -4.0191 11 1 3.8107 -1.9190 -5.1199 12 1 3.8250 -2.1755 -2.7086 13 6 2.0400 -0.7213 1.2492 14 1 1.6770 -1.7492 1.2500 15 6 3.5717 -0.7193 1.2520 16 6 4.0686 -1.3754 2.5454 17 6 3.4831 -0.6276 3.7463 18 8 2.0565 -0.6407 3.6645 19 6 1.5329 0.0012 2.5001 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 3.1263 -0.7994 -1.2056 24 1 1.6053 -1.7197 -1.2952 25 1 1.8911 -0.0460 -5.6800 26 1 3.9387 -1.2803 0.3925 27 1 3.9351 0.3071 1.2012 28 1 5.1569 -1.3286 2.5825 29 1 3.7476 -2.4167 2.5730 30 1 3.8382 0.4030 3.7409 31 1 3.7989 -1.1161 4.6681 32 1 1.8623 1.0400 2.4784 33 1 0.4438 -0.0344 2.5241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260668671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:34 Heat of formation + Delta-G solvation = -78.246645 kcal Electronic energy + Delta-G solvation = -13173.864941 eV Core-core repulsion = 11005.403854 eV Total energy + Delta-G solvation = -2168.461087 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.33462 -35.87238 -32.85001 -32.19588 -29.69790 -27.51300 -24.73809 -24.09817 -21.96337 -20.12496 -19.05852 -16.89571 -15.87832 -15.87254 -14.69147 -14.17657 -14.03470 -13.66242 -13.07597 -12.69759 -12.58514 -12.37803 -11.80414 -11.41825 -11.12615 -10.99102 -10.84773 -10.63276 -10.30997 -10.10614 -9.78607 -9.68124 -9.63411 -9.00958 -8.92563 -8.50873 -6.02247 -3.98849 3.31106 3.38645 3.41877 4.04885 4.46632 4.99972 5.06999 5.09135 5.23331 5.31921 5.39872 5.62473 5.67025 5.81795 5.88413 5.94141 6.04114 6.16470 6.22487 6.35432 6.45632 6.50845 6.61087 6.84930 6.96977 7.07980 7.31116 7.38052 7.48931 7.83404 8.57125 9.03370 9.60980 11.11273 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049028 B = 0.009487 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.963332 B = 2950.663060 C = 3341.267144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.514 4.514 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C -0.118 4.118 14 H 0.072 0.928 15 C -0.119 4.119 16 C -0.156 4.156 17 C 0.062 3.938 18 O -0.389 6.389 19 C 0.064 3.936 20 H 0.045 0.955 21 H 0.035 0.965 22 H 0.067 0.933 23 H 0.018 0.982 24 H 0.010 0.990 25 H 0.262 0.738 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -2.346 14.073 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 H 0.080 0.920 4 C -0.047 4.047 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.137 4.137 14 H 0.090 0.910 15 C -0.157 4.157 16 C -0.194 4.194 17 C -0.015 4.015 18 O -0.308 6.308 19 C -0.012 4.012 20 H 0.064 0.936 21 H 0.054 0.946 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.028 0.972 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.055 -2.428 14.017 14.550 hybrid contribution 0.723 -0.734 -0.590 1.187 sum 3.778 -3.162 13.426 14.302 Atomic orbital electron populations 1.21798 0.95953 1.00994 1.00753 1.20993 0.95304 0.99155 0.93514 0.91975 1.19667 0.96086 0.95686 0.93239 1.21176 1.35253 1.09571 0.89213 0.90913 1.25029 0.95679 0.96916 0.95970 1.69914 1.47237 1.39339 0.98002 0.86811 0.80669 0.84391 0.77597 1.20401 1.21510 1.19086 1.21893 0.95413 1.00753 0.95621 0.90955 1.21722 0.95763 1.01097 0.97080 1.22238 1.00431 1.00689 0.96062 1.22523 0.81601 0.99298 0.98112 1.87880 1.20212 1.79397 1.43347 1.22783 0.98930 0.95115 0.84396 0.93617 0.94628 0.91412 0.96342 0.97206 0.92846 0.90711 0.91965 0.91406 0.91382 0.93547 0.89580 0.93463 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.65 37.16 0.32 -2.21 16 2 C -0.07 -1.38 1.93 -90.62 -0.17 -1.55 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 4 C -0.01 -0.23 3.30 -27.88 -0.09 -0.32 16 5 C -0.51 -14.48 8.96 -34.44 -0.31 -14.79 16 6 H 0.07 2.19 7.30 -52.48 -0.38 1.81 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 9 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C -0.12 -1.95 1.97 -90.48 -0.18 -2.12 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.85 4.88 -26.48 -0.13 -1.98 16 16 C -0.16 -2.01 6.14 -26.52 -0.16 -2.17 16 17 C 0.06 0.76 6.84 37.21 0.25 1.01 16 18 O -0.39 -5.82 10.77 -35.23 -0.38 -6.20 16 19 C 0.06 0.94 5.70 37.21 0.21 1.16 16 20 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.03 0.54 6.49 -51.93 -0.34 0.21 16 22 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 23 H 0.02 0.44 5.31 -51.93 -0.28 0.16 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.07 1.27 6.51 -51.93 -0.34 0.93 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.32 6.57 -51.93 -0.34 0.98 16 LS Contribution 255.09 15.07 3.84 3.84 Total: -1.00 -30.18 255.09 -6.19 -36.37 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.40 Total: -2.81 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -0.35 Total: -21.18 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.38 Total: -6.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.18 -6.19 -36.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.880 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds