Wall clock time and date at job start Mon Mar 30 2020 02:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47076 * 2 1 4 4 C 1.52996 * 109.47037 * 240.00112 * 2 1 3 5 5 C 1.50702 * 109.46996 * 65.00051 * 4 2 1 6 6 H 1.08003 * 120.00181 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99723 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99763 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47089 * 90.00558 * 9 7 5 11 11 H 1.48497 * 109.47231 * 209.99936 * 9 7 5 12 12 H 1.48492 * 109.47356 * 330.00429 * 9 7 5 13 13 C 1.53000 * 109.46883 * 120.00347 * 2 1 3 14 14 H 1.09002 * 109.52286 * 59.99897 * 13 2 1 15 15 C 1.53177 * 109.51896 * 180.12575 * 13 2 1 16 16 C 1.53311 * 108.96735 * 176.89083 * 15 13 2 17 17 C 1.53100 * 109.19441 * 303.05955 * 16 15 13 18 18 O 1.42904 * 109.41581 * 57.60519 * 17 16 15 19 19 C 1.42899 * 114.09711 * 298.84173 * 18 17 16 20 20 H 1.09003 * 109.47070 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47188 * 299.99688 * 1 2 3 22 22 H 1.08995 * 109.47380 * 59.99383 * 1 2 3 23 23 H 1.08999 * 109.47320 * 184.99906 * 4 2 1 24 24 H 1.08999 * 109.47128 * 305.00259 * 4 2 1 25 25 H 0.97003 * 119.99857 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.54414 * 296.81428 * 15 13 2 27 27 H 1.09002 * 109.54680 * 57.08371 * 15 13 2 28 28 H 1.08992 * 109.51110 * 183.14032 * 16 15 13 29 29 H 1.08999 * 109.55790 * 62.99958 * 16 15 13 30 30 H 1.09002 * 109.47233 * 297.62202 * 17 16 15 31 31 H 1.08999 * 109.48998 * 177.59482 * 17 16 15 32 32 H 1.08999 * 109.48542 * 301.17828 * 19 18 17 33 33 H 1.09000 * 109.48175 * 181.14161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4765 6 1 1.0799 0.9743 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 1.6439 0.2769 -4.7994 9 14 2.9626 -1.9887 -3.9029 10 1 2.0233 -3.1331 -4.0191 11 1 3.8107 -1.9190 -5.1199 12 1 3.8250 -2.1755 -2.7086 13 6 2.0400 -0.7213 1.2492 14 1 1.6770 -1.7492 1.2500 15 6 3.5717 -0.7193 1.2520 16 6 4.0686 -1.3754 2.5454 17 6 3.4831 -0.6276 3.7463 18 8 2.0565 -0.6407 3.6645 19 6 1.5329 0.0012 2.5001 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 3.1263 -0.7994 -1.2056 24 1 1.6053 -1.7197 -1.2952 25 1 1.8911 -0.0460 -5.6800 26 1 3.9387 -1.2803 0.3925 27 1 3.9351 0.3071 1.2012 28 1 5.1569 -1.3286 2.5825 29 1 3.7476 -2.4167 2.5730 30 1 3.8382 0.4030 3.7409 31 1 3.7989 -1.1161 4.6681 32 1 1.8623 1.0400 2.4784 33 1 0.4438 -0.0344 2.5241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260668671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:34 Heat of formation + Delta-G solvation = -97.133465 kcal Electronic energy + Delta-G solvation = -13174.683935 eV Core-core repulsion = 11005.403854 eV Total energy + Delta-G solvation = -2169.280081 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.52008 -37.35739 -34.68273 -33.63334 -31.23699 -29.17381 -26.20357 -25.35901 -23.58650 -21.37237 -20.61384 -18.97488 -17.09604 -17.02755 -16.30529 -15.70906 -15.38398 -15.12130 -14.62491 -14.37390 -14.10242 -13.59576 -13.50463 -12.94228 -12.76498 -12.61413 -12.13333 -12.02311 -11.80535 -11.67840 -11.57724 -11.31689 -10.97113 -10.89117 -10.73912 -10.21948 -8.27288 -6.28880 1.33972 1.35128 1.46908 2.36038 3.00933 3.08130 3.84726 3.87910 3.96478 4.07588 4.32445 4.41024 4.48890 4.54514 4.70835 4.72486 4.81514 4.88550 5.02463 5.02764 5.12170 5.13669 5.22910 5.32555 5.40365 5.43032 5.58127 5.72315 5.73961 6.30995 6.33513 6.78725 7.34536 8.89497 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049028 B = 0.009487 C = 0.008378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.963332 B = 2950.663060 C = 3341.267144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 H 0.052 0.948 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.036 0.964 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.247 1.247 13 C -0.111 4.111 14 H 0.068 0.932 15 C -0.123 4.123 16 C -0.150 4.150 17 C 0.056 3.944 18 O -0.401 6.401 19 C 0.069 3.931 20 H 0.049 0.951 21 H 0.068 0.932 22 H 0.035 0.965 23 H 0.022 0.978 24 H 0.010 0.990 25 H 0.264 0.736 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 -3.612 16.118 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.769 3.231 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.130 4.130 14 H 0.086 0.914 15 C -0.161 4.161 16 C -0.188 4.188 17 C -0.021 4.021 18 O -0.320 6.320 19 C -0.007 4.007 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.107 -3.693 16.088 17.010 hybrid contribution 0.365 -0.259 -1.220 1.300 sum 4.472 -3.952 14.868 16.021 Atomic orbital electron populations 1.21745 0.95309 1.01264 1.00806 1.20893 0.95906 0.98487 0.93340 0.92912 1.19615 0.96248 0.95309 0.93130 1.21513 1.34189 1.08696 0.91300 0.94618 1.25977 0.97048 1.00824 0.95596 1.70069 1.49143 1.41608 0.98688 0.85732 0.79423 0.79692 0.78262 1.19515 1.21129 1.17060 1.21775 0.96196 1.00157 0.94838 0.91400 1.21731 0.95010 1.01200 0.98128 1.22206 1.01736 1.00255 0.94595 1.22754 0.80236 1.00175 0.98887 1.87874 1.21820 1.79439 1.42906 1.22701 0.99410 0.95093 0.83532 0.93201 0.91317 0.94612 0.96023 0.97148 0.92710 0.92429 0.91970 0.89315 0.91544 0.92607 0.87126 0.92834 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.65 71.98 0.62 -4.23 16 2 C -0.07 -2.58 1.93 -10.79 -0.02 -2.60 16 3 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.01 -0.27 3.30 29.85 0.10 -0.17 16 5 C -0.52 -29.91 8.96 25.60 0.23 -29.68 16 6 H 0.04 2.26 7.30 -2.91 -0.02 2.24 16 7 C 0.00 0.10 5.47 84.66 0.46 0.56 16 8 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 9 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 13 C -0.11 -3.44 1.97 -10.70 -0.02 -3.46 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.12 -3.57 4.88 30.76 0.15 -3.42 16 16 C -0.15 -3.38 6.14 30.73 0.19 -3.19 16 17 C 0.06 1.18 6.84 72.02 0.49 1.67 16 18 O -0.40 -10.73 10.77 -148.98 -1.60 -12.34 16 19 C 0.07 1.86 5.70 72.01 0.41 2.27 16 20 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.07 2.00 6.49 -2.39 -0.02 1.98 16 22 H 0.03 1.49 6.95 -2.39 -0.02 1.48 16 23 H 0.02 1.00 5.31 -2.39 -0.01 0.99 16 24 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.06 1.85 6.51 -2.39 -0.02 1.83 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 33 H 0.10 2.54 6.57 -2.39 -0.02 2.53 16 Total: -1.00 -65.32 255.09 4.20 -61.12 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.00 Total: 6.86 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 2.61 Total: -42.26 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.30 Total: -60.23 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.60 Total: -12.34 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -65.32 4.20 -61.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260668671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.013 kcal (2) G-P(sol) polarization free energy of solvation -65.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds