Wall clock time and date at job start Mon Mar 30 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 H 1.09005 * 109.46705 * 55.06661 * 3 2 1 5 5 C 1.50702 * 109.47438 * 175.06618 * 3 2 1 6 6 H 1.08003 * 119.99631 * 114.52332 * 5 3 2 7 7 C 1.37875 * 119.99950 * 294.52965 * 5 3 2 8 8 N 1.31511 * 119.99946 * 350.89370 * 7 5 3 9 9 Si 1.86798 * 119.99708 * 170.90088 * 7 5 3 10 10 H 1.48495 * 109.47368 * 89.99810 * 9 7 5 11 11 H 1.48505 * 109.46890 * 209.99708 * 9 7 5 12 12 H 1.48500 * 109.47128 * 329.99360 * 9 7 5 13 13 C 1.52995 * 109.46805 * 295.06968 * 3 2 1 14 14 H 1.09001 * 109.48588 * 59.97566 * 13 3 2 15 15 C 1.53094 * 109.48053 * 180.02562 * 13 3 2 16 16 C 1.53180 * 109.16580 * 177.60511 * 15 13 3 17 17 C 1.53183 * 109.03035 * 303.01509 * 16 15 13 18 18 C 1.53088 * 109.21374 * 56.95433 * 17 16 15 19 19 O 1.42901 * 109.49215 * 299.94519 * 13 3 2 20 20 H 1.09006 * 109.46915 * 185.78806 * 1 2 3 21 21 H 1.08997 * 109.47078 * 305.78662 * 1 2 3 22 22 H 1.09000 * 109.46604 * 65.78893 * 1 2 3 23 23 H 1.08996 * 109.47134 * 239.99488 * 2 1 3 24 24 H 1.09005 * 109.47011 * 120.00100 * 2 1 3 25 25 H 0.97006 * 119.99862 * 180.02562 * 8 7 5 26 26 H 1.08992 * 109.52438 * 57.69091 * 15 13 3 27 27 H 1.09004 * 109.51919 * 297.50463 * 15 13 3 28 28 H 1.09002 * 109.54451 * 183.14971 * 16 15 13 29 29 H 1.08997 * 109.54664 * 62.87880 * 16 15 13 30 30 H 1.09007 * 109.51747 * 176.88383 * 17 16 15 31 31 H 1.08993 * 109.52542 * 297.01092 * 17 16 15 32 32 H 1.08999 * 109.48463 * 62.40111 * 18 17 16 33 33 H 1.09008 * 109.47771 * 182.43972 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6064 1.9811 0.8426 5 6 3.5421 1.4442 0.1222 6 1 4.1498 1.8085 -0.6930 7 6 4.1406 0.9806 1.2746 8 7 3.4077 0.7058 2.3313 9 14 5.9924 0.7432 1.3347 10 1 6.6374 1.9971 1.8002 11 1 6.3197 -0.3599 2.2735 12 1 6.4922 0.4034 -0.0217 13 6 1.6338 2.1269 -1.3066 14 1 0.5474 2.1254 -1.3953 15 6 2.1446 3.5702 -1.3072 16 6 1.7863 4.2299 -2.6423 17 6 2.3826 3.4018 -3.7847 18 6 1.8639 1.9646 -3.6891 19 8 2.2032 1.4217 -2.4114 20 1 -0.3633 -1.0225 0.1036 21 1 -0.3633 0.6009 0.8336 22 1 -0.3632 0.4215 -0.9373 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 3.8288 0.3800 3.1422 26 1 3.2269 3.5736 -1.1780 27 1 1.6778 4.1221 -0.4913 28 1 2.1957 5.2397 -2.6716 29 1 0.7023 4.2713 -2.7493 30 1 2.0859 3.8332 -4.7407 31 1 3.4697 3.4027 -3.7063 32 1 0.7806 1.9603 -3.8093 33 1 2.3193 1.3609 -4.4742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260671829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:19 Heat of formation + Delta-G solvation = -75.554663 kcal Electronic energy + Delta-G solvation = -13549.285888 eV Core-core repulsion = 11380.941534 eV Total energy + Delta-G solvation = -2168.344354 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.74000 -34.71615 -32.91668 -31.61725 -30.14702 -26.91773 -24.25773 -23.33802 -21.97197 -19.68880 -19.07582 -16.44651 -15.46740 -14.75054 -14.40935 -14.06052 -13.85831 -13.12019 -13.03941 -12.56170 -11.99982 -11.74561 -11.34504 -11.11299 -10.93257 -10.70650 -10.58308 -10.46537 -10.32946 -10.00131 -9.71802 -9.54662 -8.92595 -8.69655 -8.38746 -8.20160 -5.90276 -3.88016 3.37607 3.44800 3.50874 4.55069 4.68561 5.27097 5.32718 5.39025 5.47157 5.73267 5.80331 6.00818 6.10016 6.17535 6.29276 6.31843 6.34377 6.42910 6.51755 6.56563 6.63783 6.89783 7.01937 7.14874 7.31904 7.50028 7.80423 7.99860 8.11198 8.25002 8.61610 9.14118 9.72880 11.19190 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032239 B = 0.013394 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.304206 B = 2090.011820 C = 2546.969141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.055 3.945 4 H 0.043 0.957 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.102 3.898 14 H 0.030 0.970 15 C -0.143 4.143 16 C -0.123 4.123 17 C -0.153 4.153 18 C 0.058 3.942 19 O -0.359 6.359 20 H 0.032 0.968 21 H 0.043 0.957 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.258 0.742 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 3.643 -8.227 9.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C 0.037 3.963 4 H 0.061 0.939 5 C -0.532 4.532 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.712 3.288 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.045 3.955 14 H 0.048 0.952 15 C -0.180 4.180 16 C -0.160 4.160 17 C -0.191 4.191 18 C -0.020 4.020 19 O -0.277 6.277 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.797 3.411 -8.011 9.499 hybrid contribution 0.836 0.131 0.026 0.846 sum -2.961 3.543 -7.985 9.224 Atomic orbital electron populations 1.21873 0.99572 0.99276 0.99748 1.21469 0.91349 1.00408 1.01460 1.18809 0.96529 0.92002 0.89005 0.93936 1.21083 0.91111 1.40809 1.00157 0.92276 1.24946 0.97540 0.96053 0.95616 1.69961 1.35070 1.46049 1.02227 0.86731 0.86664 0.77635 0.77801 1.21013 1.21423 1.19912 1.22348 0.93666 0.90778 0.88697 0.95177 1.22158 1.03703 0.96880 0.95306 1.21637 0.99756 0.98581 0.96066 1.22155 1.01692 0.97062 0.98171 1.22421 0.97989 0.93570 0.88031 1.88098 1.73661 1.53559 1.12430 0.94872 0.93805 0.94509 0.93744 0.91050 0.93267 0.89910 0.91965 0.92539 0.92891 0.92286 0.91291 0.94615 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.52 37.16 0.35 -2.62 16 2 C -0.11 -2.63 5.21 -26.73 -0.14 -2.77 16 3 C 0.05 1.37 1.54 -91.78 -0.14 1.23 16 4 H 0.04 1.15 8.09 -51.93 -0.42 0.73 16 5 C -0.49 -13.60 7.30 -34.44 -0.25 -13.85 16 6 H 0.06 1.66 6.84 -52.48 -0.36 1.30 16 7 C 0.06 1.65 5.17 -17.82 -0.09 1.56 16 8 N -0.89 -25.95 12.14 55.43 0.67 -25.28 16 9 Si 0.88 21.80 29.55 -169.99 -5.02 16.78 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.10 2.18 2.10 -26.69 -0.06 2.13 16 14 H 0.03 0.61 6.69 -51.93 -0.35 0.27 16 15 C -0.14 -2.77 5.20 -26.59 -0.14 -2.91 16 16 C -0.12 -1.92 6.03 -26.54 -0.16 -2.08 16 17 C -0.15 -2.30 6.13 -26.59 -0.16 -2.46 16 18 C 0.06 0.95 6.85 37.20 0.25 1.21 16 19 O -0.36 -7.70 9.18 -35.23 -0.32 -8.03 16 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.69 6.85 -51.93 -0.36 0.33 16 23 H 0.04 1.09 7.54 -51.93 -0.39 0.70 16 24 H 0.07 1.91 6.79 -51.93 -0.35 1.56 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.08 1.78 6.66 -51.93 -0.35 1.43 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 LS Contribution 258.30 15.07 3.89 3.89 Total: -1.00 -28.83 258.30 -6.83 -35.66 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.51 Total: -2.45 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -0.53 Total: -20.57 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.67 Total: -25.28 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.32 Total: -8.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.83 -6.83 -35.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.896 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds