Wall clock time and date at job start Mon Mar 30 2020 02:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 H 1.09005 * 109.46705 * 55.06661 * 3 2 1 5 5 C 1.50702 * 109.47438 * 175.06618 * 3 2 1 6 6 H 1.08003 * 119.99631 * 114.52332 * 5 3 2 7 7 C 1.37875 * 119.99950 * 294.52965 * 5 3 2 8 8 N 1.31511 * 119.99946 * 350.89370 * 7 5 3 9 9 Si 1.86798 * 119.99708 * 170.90088 * 7 5 3 10 10 H 1.48495 * 109.47368 * 89.99810 * 9 7 5 11 11 H 1.48505 * 109.46890 * 209.99708 * 9 7 5 12 12 H 1.48500 * 109.47128 * 329.99360 * 9 7 5 13 13 C 1.52995 * 109.46805 * 295.06968 * 3 2 1 14 14 H 1.09001 * 109.48588 * 59.97566 * 13 3 2 15 15 C 1.53094 * 109.48053 * 180.02562 * 13 3 2 16 16 C 1.53180 * 109.16580 * 177.60511 * 15 13 3 17 17 C 1.53183 * 109.03035 * 303.01509 * 16 15 13 18 18 C 1.53088 * 109.21374 * 56.95433 * 17 16 15 19 19 O 1.42901 * 109.49215 * 299.94519 * 13 3 2 20 20 H 1.09006 * 109.46915 * 185.78806 * 1 2 3 21 21 H 1.08997 * 109.47078 * 305.78662 * 1 2 3 22 22 H 1.09000 * 109.46604 * 65.78893 * 1 2 3 23 23 H 1.08996 * 109.47134 * 239.99488 * 2 1 3 24 24 H 1.09005 * 109.47011 * 120.00100 * 2 1 3 25 25 H 0.97006 * 119.99862 * 180.02562 * 8 7 5 26 26 H 1.08992 * 109.52438 * 57.69091 * 15 13 3 27 27 H 1.09004 * 109.51919 * 297.50463 * 15 13 3 28 28 H 1.09002 * 109.54451 * 183.14971 * 16 15 13 29 29 H 1.08997 * 109.54664 * 62.87880 * 16 15 13 30 30 H 1.09007 * 109.51747 * 176.88383 * 17 16 15 31 31 H 1.08993 * 109.52542 * 297.01092 * 17 16 15 32 32 H 1.08999 * 109.48463 * 62.40111 * 18 17 16 33 33 H 1.09008 * 109.47771 * 182.43972 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6064 1.9811 0.8426 5 6 3.5421 1.4442 0.1222 6 1 4.1498 1.8085 -0.6930 7 6 4.1406 0.9806 1.2746 8 7 3.4077 0.7058 2.3313 9 14 5.9924 0.7432 1.3347 10 1 6.6374 1.9971 1.8002 11 1 6.3197 -0.3599 2.2735 12 1 6.4922 0.4034 -0.0217 13 6 1.6338 2.1269 -1.3066 14 1 0.5474 2.1254 -1.3953 15 6 2.1446 3.5702 -1.3072 16 6 1.7863 4.2299 -2.6423 17 6 2.3826 3.4018 -3.7847 18 6 1.8639 1.9646 -3.6891 19 8 2.2032 1.4217 -2.4114 20 1 -0.3633 -1.0225 0.1036 21 1 -0.3633 0.6009 0.8336 22 1 -0.3632 0.4215 -0.9373 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 3.8288 0.3800 3.1422 26 1 3.2269 3.5736 -1.1780 27 1 1.6778 4.1221 -0.4913 28 1 2.1957 5.2397 -2.6716 29 1 0.7023 4.2713 -2.7493 30 1 2.0859 3.8332 -4.7407 31 1 3.4697 3.4027 -3.7063 32 1 0.7806 1.9603 -3.8093 33 1 2.3193 1.3609 -4.4742 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260671829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:19 Heat of formation + Delta-G solvation = -92.241328 kcal Electronic energy + Delta-G solvation = -13550.009476 eV Core-core repulsion = 11380.941534 eV Total energy + Delta-G solvation = -2169.067942 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27647 -36.55408 -34.34758 -33.66679 -31.69462 -28.74212 -25.97893 -24.94083 -23.59720 -21.15335 -20.90704 -18.43180 -17.03052 -16.57559 -16.16440 -15.46250 -15.39058 -14.72331 -14.64755 -14.39306 -13.44042 -13.36664 -13.28112 -12.86799 -12.70837 -12.48152 -12.23607 -12.04272 -11.86083 -11.72949 -11.50026 -11.20357 -10.82762 -10.48763 -10.35714 -9.98688 -8.05876 -6.08862 1.39432 1.42049 1.52510 2.47761 3.16176 3.31500 4.02957 4.05790 4.13955 4.30403 4.42584 4.57138 4.63747 4.65479 4.73103 4.85094 4.93504 4.95948 5.07056 5.16971 5.22317 5.28185 5.33332 5.45500 5.57149 5.60107 5.73984 5.97163 6.08406 6.43338 6.77584 6.99446 7.54425 9.02977 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032239 B = 0.013394 C = 0.010991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.304206 B = 2090.011820 C = 2546.969141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.050 3.950 4 H 0.014 0.986 5 C -0.501 4.501 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.922 5.922 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.109 3.891 14 H 0.045 0.955 15 C -0.142 4.142 16 C -0.117 4.117 17 C -0.149 4.149 18 C 0.048 3.952 19 O -0.391 6.391 20 H 0.051 0.949 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.258 0.742 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 4.265 -9.947 11.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C 0.032 3.968 4 H 0.032 0.968 5 C -0.539 4.539 6 H 0.067 0.933 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.052 3.948 14 H 0.063 0.937 15 C -0.180 4.180 16 C -0.154 4.154 17 C -0.187 4.187 18 C -0.029 4.029 19 O -0.311 6.311 20 H 0.071 0.929 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.318 4.043 -9.745 11.400 hybrid contribution 0.986 -0.064 0.519 1.116 sum -3.332 3.979 -9.226 10.585 Atomic orbital electron populations 1.21741 0.96277 1.00734 1.00653 1.21305 0.94299 0.99307 0.99192 1.18744 0.95015 0.92587 0.90489 0.96832 1.21319 0.92695 1.40218 0.99651 0.93348 1.25638 1.01518 0.96126 0.95466 1.70071 1.36569 1.46974 1.02608 0.85812 0.82007 0.77734 0.77657 1.20245 1.21080 1.19827 1.22080 0.94275 0.91160 0.87267 0.93741 1.22088 1.01633 0.96319 0.97987 1.21613 1.01056 0.99105 0.93651 1.22141 1.00758 0.96146 0.99650 1.22744 0.99440 0.94730 0.85991 1.88025 1.74294 1.54620 1.14147 0.92944 0.93951 0.92677 0.94666 0.94476 0.93344 0.92859 0.92215 0.90746 0.91072 0.88641 0.92700 0.92811 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 9.52 71.98 0.69 -4.69 16 2 C -0.10 -5.04 5.21 30.59 0.16 -4.88 16 3 C 0.05 2.55 1.54 -11.54 -0.02 2.53 16 4 H 0.01 0.77 8.09 -2.38 -0.02 0.75 16 5 C -0.50 -28.27 7.30 25.60 0.19 -28.08 16 6 H 0.05 2.78 6.84 -2.91 -0.02 2.76 16 7 C 0.01 0.57 5.17 84.65 0.44 1.01 16 8 N -0.92 -54.89 12.14 21.45 0.26 -54.63 16 9 Si 0.94 45.44 29.55 68.60 2.03 47.47 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.11 4.60 2.10 30.62 0.06 4.67 16 14 H 0.04 1.73 6.69 -2.39 -0.02 1.71 16 15 C -0.14 -5.44 5.20 30.69 0.16 -5.28 16 16 C -0.12 -3.31 6.03 30.72 0.19 -3.12 16 17 C -0.15 -4.00 6.13 30.68 0.19 -3.82 16 18 C 0.05 1.44 6.85 72.01 0.49 1.93 16 19 O -0.39 -16.40 9.18 -148.98 -1.37 -17.76 16 20 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.95 6.85 -2.39 -0.02 1.93 16 23 H 0.03 1.74 7.54 -2.39 -0.02 1.72 16 24 H 0.04 2.04 6.79 -2.38 -0.02 2.02 16 25 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 26 H 0.05 2.32 6.66 -2.39 -0.02 2.30 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 Total: -1.00 -62.74 258.30 4.52 -58.23 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.05 Total: 6.43 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 2.54 Total: -39.73 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.26 Total: -54.63 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.37 Total: -17.76 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -62.74 4.52 -58.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.015 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds