Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47244 * 2 1 4 4 H 1.08999 * 109.47472 * 304.99673 * 3 2 1 5 5 C 1.50705 * 109.47172 * 185.00183 * 3 2 1 6 6 H 1.08001 * 119.99797 * 239.99604 * 5 3 2 7 7 C 1.37876 * 120.00089 * 60.00197 * 5 3 2 8 8 N 1.31513 * 119.99864 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47582 * 59.99826 * 9 7 5 11 11 H 1.48503 * 109.46834 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47099 * 299.99067 * 9 7 5 13 13 C 1.53000 * 109.47330 * 64.99993 * 3 2 1 14 14 H 1.09000 * 109.48930 * 304.97349 * 13 3 2 15 15 C 1.53090 * 109.48304 * 184.94155 * 13 3 2 16 16 C 1.53176 * 109.16668 * 182.40914 * 15 13 3 17 17 C 1.53181 * 109.03564 * 56.97896 * 16 15 13 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 16 15 19 19 O 1.42902 * 109.47734 * 65.00209 * 13 3 2 20 20 H 1.09004 * 109.47266 * 59.99503 * 1 2 3 21 21 H 1.08995 * 109.47479 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47339 * 300.00249 * 1 2 3 23 23 H 1.09002 * 109.46948 * 240.00057 * 2 1 3 24 24 H 1.09001 * 109.47476 * 120.00025 * 2 1 3 25 25 H 0.97005 * 120.00015 * 180.02562 * 8 7 5 26 26 H 1.09005 * 109.52564 * 302.31806 * 15 13 3 27 27 H 1.09001 * 109.51975 * 62.50094 * 15 13 3 28 28 H 1.09005 * 109.54225 * 297.11519 * 16 15 13 29 29 H 1.08991 * 109.54673 * 176.84737 * 16 15 13 30 30 H 1.08998 * 109.52547 * 183.11606 * 17 16 15 31 31 H 1.09004 * 109.52249 * 62.92485 * 17 16 15 32 32 H 1.08996 * 109.47593 * 177.59033 * 18 17 16 33 33 H 1.09001 * 109.48107 * 297.61277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2344 11 1 6.3978 0.2157 -2.6499 12 1 6.5004 2.2799 -1.3810 13 6 1.6352 2.1266 1.3073 14 1 0.5562 2.0477 1.4402 15 6 2.0368 3.6030 1.2566 16 6 1.6831 4.2665 2.5912 17 6 2.3837 3.5121 3.7254 18 6 1.9687 2.0391 3.6807 19 8 2.2980 1.4914 2.4025 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8292 -0.0618 -2.9496 26 1 3.1100 3.6829 1.0833 27 1 1.4986 4.0993 0.4491 28 1 0.6040 4.2307 2.7414 29 1 2.0171 5.3039 2.5825 30 1 2.0935 3.9433 4.6835 31 1 3.4639 3.5900 3.6020 32 1 2.4972 1.4888 4.4591 33 1 0.8941 1.9591 3.8448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260671832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -73.721587 kcal Electronic energy + Delta-G solvation = -13553.910512 eV Core-core repulsion = 11385.645646 eV Total energy + Delta-G solvation = -2168.264866 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.73640 -34.73386 -32.91318 -31.58198 -30.11636 -26.91813 -24.26328 -23.30734 -21.97297 -19.67606 -19.04246 -16.44902 -15.45146 -14.75261 -14.41991 -14.07761 -13.85403 -13.10659 -12.99971 -12.56965 -12.00616 -11.75428 -11.28742 -11.08155 -10.92124 -10.69024 -10.55940 -10.49347 -10.33998 -9.96962 -9.68756 -9.54579 -8.85206 -8.72999 -8.38888 -8.17480 -5.85557 -3.88422 3.40206 3.44177 3.48072 4.54914 4.69943 5.26530 5.31853 5.38827 5.47917 5.72125 5.80058 5.99888 6.09206 6.16871 6.30236 6.32976 6.39148 6.43048 6.51161 6.58561 6.64441 6.90951 7.07235 7.10708 7.33355 7.56975 7.83634 8.03437 8.20394 8.30854 8.64328 9.13673 9.73590 11.20330 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.013491 C = 0.010924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.210651 B = 2074.945712 C = 2562.454417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.056 3.944 4 H 0.036 0.964 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.101 3.899 14 H 0.032 0.968 15 C -0.144 4.144 16 C -0.122 4.122 17 C -0.153 4.153 18 C 0.057 3.943 19 O -0.356 6.356 20 H 0.041 0.959 21 H 0.032 0.968 22 H 0.034 0.966 23 H 0.092 0.908 24 H 0.039 0.961 25 H 0.258 0.742 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 4.355 7.786 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.054 0.946 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.044 3.956 14 H 0.050 0.950 15 C -0.182 4.182 16 C -0.160 4.160 17 C -0.191 4.191 18 C -0.021 4.021 19 O -0.274 6.274 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.110 0.890 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.749 4.109 7.576 9.398 hybrid contribution 0.804 0.261 -0.016 0.845 sum -2.945 4.370 7.560 9.215 Atomic orbital electron populations 1.21892 0.99909 0.99073 0.99628 1.21563 0.90966 1.00390 1.02632 1.18780 0.96445 0.92255 0.88727 0.94618 1.21082 0.91202 1.36274 1.04225 0.92302 1.24954 0.97644 0.95764 0.96019 1.69867 1.34586 1.39464 1.09680 0.86716 0.86512 0.78026 0.77048 1.20407 1.21573 1.20531 1.22370 0.93098 0.91082 0.89097 0.95007 1.22169 1.03563 0.96997 0.95455 1.21627 0.99474 0.98838 0.96053 1.22160 1.01526 0.97172 0.98228 1.22426 0.98423 0.93140 0.88113 1.88131 1.68832 1.57702 1.12784 0.93966 0.94933 0.94695 0.88961 0.94198 0.93226 0.90104 0.92002 0.92847 0.92543 0.92256 0.91287 0.90145 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.67 37.15 0.36 -2.67 16 2 C -0.12 -2.89 5.19 -26.74 -0.14 -3.03 16 3 C 0.06 1.41 1.62 -91.77 -0.15 1.26 16 4 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.49 -13.55 7.43 -34.44 -0.26 -13.80 16 6 H 0.06 1.65 6.87 -52.49 -0.36 1.29 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 8 N -0.90 -25.92 11.29 55.43 0.63 -25.29 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.10 2.16 2.15 -26.68 -0.06 2.10 16 14 H 0.03 0.65 6.35 -51.93 -0.33 0.32 16 15 C -0.14 -2.77 5.26 -26.59 -0.14 -2.91 16 16 C -0.12 -1.90 6.03 -26.55 -0.16 -2.06 16 17 C -0.15 -2.30 6.14 -26.59 -0.16 -2.46 16 18 C 0.06 0.95 6.84 37.21 0.25 1.20 16 19 O -0.36 -7.74 9.20 -35.23 -0.32 -8.07 16 20 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 21 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.03 0.66 6.46 -51.93 -0.34 0.33 16 23 H 0.09 2.53 5.95 -51.93 -0.31 2.22 16 24 H 0.04 1.00 7.70 -51.93 -0.40 0.60 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.08 1.72 6.89 -51.93 -0.36 1.36 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 256.92 15.07 3.87 3.87 Total: -1.00 -28.80 256.92 -6.85 -35.64 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.45 Total: -2.10 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -0.54 Total: -20.90 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.63 Total: -25.29 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.32 Total: -8.07 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.80 -6.85 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.079 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds