Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47244 * 2 1 4 4 H 1.08999 * 109.47472 * 304.99673 * 3 2 1 5 5 C 1.50705 * 109.47172 * 185.00183 * 3 2 1 6 6 H 1.08001 * 119.99797 * 239.99604 * 5 3 2 7 7 C 1.37876 * 120.00089 * 60.00197 * 5 3 2 8 8 N 1.31513 * 119.99864 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47582 * 59.99826 * 9 7 5 11 11 H 1.48503 * 109.46834 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47099 * 299.99067 * 9 7 5 13 13 C 1.53000 * 109.47330 * 64.99993 * 3 2 1 14 14 H 1.09000 * 109.48930 * 304.97349 * 13 3 2 15 15 C 1.53090 * 109.48304 * 184.94155 * 13 3 2 16 16 C 1.53176 * 109.16668 * 182.40914 * 15 13 3 17 17 C 1.53181 * 109.03564 * 56.97896 * 16 15 13 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 16 15 19 19 O 1.42902 * 109.47734 * 65.00209 * 13 3 2 20 20 H 1.09004 * 109.47266 * 59.99503 * 1 2 3 21 21 H 1.08995 * 109.47479 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47339 * 300.00249 * 1 2 3 23 23 H 1.09002 * 109.46948 * 240.00057 * 2 1 3 24 24 H 1.09001 * 109.47476 * 120.00025 * 2 1 3 25 25 H 0.97005 * 120.00015 * 180.02562 * 8 7 5 26 26 H 1.09005 * 109.52564 * 302.31806 * 15 13 3 27 27 H 1.09001 * 109.51975 * 62.50094 * 15 13 3 28 28 H 1.09005 * 109.54225 * 297.11519 * 16 15 13 29 29 H 1.08991 * 109.54673 * 176.84737 * 16 15 13 30 30 H 1.08998 * 109.52547 * 183.11606 * 17 16 15 31 31 H 1.09004 * 109.52249 * 62.92485 * 17 16 15 32 32 H 1.08996 * 109.47593 * 177.59033 * 18 17 16 33 33 H 1.09001 * 109.48107 * 297.61277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5967 0.1452 -0.2344 11 1 6.3978 0.2157 -2.6499 12 1 6.5004 2.2799 -1.3810 13 6 1.6352 2.1266 1.3073 14 1 0.5562 2.0477 1.4402 15 6 2.0368 3.6030 1.2566 16 6 1.6831 4.2665 2.5912 17 6 2.3837 3.5121 3.7254 18 6 1.9687 2.0391 3.6807 19 8 2.2980 1.4914 2.4025 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.8292 -0.0618 -2.9496 26 1 3.1100 3.6829 1.0833 27 1 1.4986 4.0993 0.4491 28 1 0.6040 4.2307 2.7414 29 1 2.0171 5.3039 2.5825 30 1 2.0935 3.9433 4.6835 31 1 3.4639 3.5900 3.6020 32 1 2.4972 1.4888 4.4591 33 1 0.8941 1.9591 3.8448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260671832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -90.344038 kcal Electronic energy + Delta-G solvation = -13554.631315 eV Core-core repulsion = 11385.645646 eV Total energy + Delta-G solvation = -2168.985669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.27648 -36.58493 -34.33923 -33.62744 -31.67674 -28.75178 -25.97584 -24.92010 -23.60683 -21.11087 -20.90961 -18.43201 -17.02141 -16.59057 -16.17414 -15.46970 -15.38610 -14.69431 -14.62592 -14.43136 -13.47659 -13.34879 -13.18373 -12.82441 -12.73138 -12.48308 -12.23382 -12.02283 -11.82210 -11.74980 -11.46898 -11.24844 -10.76684 -10.55176 -10.31117 -9.97461 -8.00246 -6.09174 1.41543 1.43477 1.50529 2.48283 3.17094 3.32699 4.02482 4.05274 4.13083 4.29340 4.40900 4.60134 4.63350 4.68517 4.74005 4.87383 4.93302 4.95823 5.06501 5.16759 5.21713 5.27371 5.35299 5.45342 5.56036 5.63903 5.75577 5.99718 6.19274 6.46387 6.78451 6.99379 7.55240 9.03999 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032131 B = 0.013491 C = 0.010924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.210651 B = 2074.945712 C = 2562.454417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.051 3.949 4 H 0.010 0.990 5 C -0.499 4.499 6 H 0.048 0.952 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.107 3.893 14 H 0.046 0.954 15 C -0.144 4.144 16 C -0.117 4.117 17 C -0.149 4.149 18 C 0.047 3.953 19 O -0.391 6.391 20 H 0.041 0.959 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.257 0.743 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 5.196 9.354 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.032 3.968 4 H 0.028 0.972 5 C -0.537 4.537 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.050 3.950 14 H 0.064 0.936 15 C -0.181 4.181 16 C -0.154 4.154 17 C -0.187 4.187 18 C -0.030 4.030 19 O -0.310 6.310 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.274 4.960 9.157 11.257 hybrid contribution 0.956 -0.012 -0.466 1.064 sum -3.318 4.947 8.691 10.537 Atomic orbital electron populations 1.21756 0.96581 1.00619 1.00478 1.21393 0.93961 0.99503 1.00216 1.18727 0.94979 0.92710 0.90337 0.97174 1.21320 0.92784 1.35797 1.03831 0.93373 1.25662 1.01697 0.95729 0.95938 1.70000 1.36005 1.40146 1.10016 0.85801 0.81752 0.78229 0.76965 1.20327 1.21095 1.19786 1.22117 0.93581 0.91716 0.87564 0.93646 1.22103 1.01668 0.96187 0.98181 1.21607 1.00700 0.99445 0.93639 1.22144 1.00638 0.96099 0.99801 1.22744 0.99857 0.94379 0.86024 1.88055 1.69497 1.58885 1.14593 0.93944 0.93077 0.92905 0.92249 0.95545 0.93366 0.92969 0.91911 0.91045 0.90629 0.88620 0.92680 0.88630 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.67 71.98 0.70 -4.78 16 2 C -0.11 -5.62 5.19 30.59 0.16 -5.46 16 3 C 0.05 2.60 1.62 -11.54 -0.02 2.58 16 4 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 5 C -0.50 -28.27 7.43 25.60 0.19 -28.08 16 6 H 0.05 2.77 6.87 -2.91 -0.02 2.75 16 7 C 0.01 0.39 5.29 84.65 0.45 0.84 16 8 N -0.92 -54.56 11.29 21.45 0.24 -54.32 16 9 Si 0.95 45.49 29.54 68.60 2.03 47.52 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.11 4.54 2.15 30.62 0.07 4.60 16 14 H 0.05 1.78 6.35 -2.39 -0.02 1.76 16 15 C -0.14 -5.41 5.26 30.68 0.16 -5.25 16 16 C -0.12 -3.27 6.03 30.71 0.19 -3.08 16 17 C -0.15 -4.01 6.14 30.69 0.19 -3.83 16 18 C 0.05 1.43 6.84 72.01 0.49 1.93 16 19 O -0.39 -16.68 9.20 -148.98 -1.37 -18.05 16 20 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.05 1.90 6.46 -2.39 -0.02 1.89 16 23 H 0.06 3.35 5.95 -2.39 -0.01 3.33 16 24 H 0.03 1.34 7.70 -2.39 -0.02 1.32 16 25 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 26 H 0.05 2.24 6.89 -2.38 -0.02 2.22 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -62.63 256.92 4.52 -58.11 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.06 Total: 7.27 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 2.57 Total: -40.53 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.24 Total: -54.32 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -1.37 Total: -18.05 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -62.63 4.52 -58.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.233 kcal (2) G-P(sol) polarization free energy of solvation -62.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds