Wall clock time and date at job start Mon Mar 30 2020 02:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46926 * 2 1 4 4 C 1.50691 * 109.47347 * 239.99431 * 2 1 3 5 5 H 1.07996 * 120.00322 * 275.03010 * 4 2 1 6 6 C 1.37879 * 119.99990 * 95.02857 * 4 2 1 7 7 N 1.31510 * 120.00334 * 184.89342 * 6 4 2 8 8 Si 1.86800 * 120.00006 * 4.89086 * 6 4 2 9 9 H 1.48503 * 109.46937 * 84.79259 * 8 6 4 10 10 H 1.48501 * 109.47145 * 204.79032 * 8 6 4 11 11 H 1.48498 * 109.47217 * 324.79262 * 8 6 4 12 12 C 1.53000 * 109.46905 * 119.99301 * 2 1 3 13 13 H 1.09000 * 108.70371 * 181.62990 * 12 2 1 14 14 C 1.50418 * 108.82098 * 300.00304 * 12 2 1 15 15 C 1.54202 * 108.89224 * 213.49235 * 14 12 2 16 16 C 1.46284 * 112.06891 * 282.13213 * 15 14 12 17 17 C 1.54204 * 112.07292 * 60.89524 * 16 15 14 18 18 C 1.50405 * 108.77048 * 282.18488 * 17 16 15 19 19 O 1.44191 * 112.77690 * 92.57627 * 18 17 16 20 20 H 1.08997 * 109.46949 * 175.19008 * 1 2 3 21 21 H 1.09000 * 109.47790 * 295.19384 * 1 2 3 22 22 H 1.09000 * 109.46852 * 55.18974 * 1 2 3 23 23 H 0.96999 * 120.00499 * 179.97438 * 7 6 4 24 24 H 1.09007 * 109.58565 * 93.63476 * 14 12 2 25 25 H 1.09000 * 109.58838 * 333.35114 * 14 12 2 26 26 H 1.08998 * 108.96527 * 42.80172 * 15 14 12 27 27 H 1.09008 * 108.96217 * 161.55378 * 15 14 12 28 28 H 1.09003 * 108.96114 * 181.55877 * 16 15 14 29 29 H 1.08996 * 108.96497 * 300.31275 * 16 15 14 30 30 H 1.09001 * 109.58778 * 41.97382 * 17 16 15 31 31 H 1.09000 * 109.58920 * 162.25663 * 17 16 15 32 32 H 1.08999 * 108.82839 * 213.42690 * 18 17 16 33 33 H 1.08998 * 108.82485 * 331.84025 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1351 -1.7855 -1.2290 6 6 2.3609 0.0120 -2.3578 7 7 2.7070 -0.6132 -3.4618 8 14 2.3142 1.8790 -2.3172 9 1 3.5992 2.3947 -1.7804 10 1 2.1081 2.3990 -3.6929 11 1 1.1983 2.3274 -1.4462 12 6 2.0400 -0.7211 1.2493 13 1 3.1295 -0.6885 1.2515 14 6 1.5305 -0.0006 2.4675 15 6 2.5876 -0.1011 3.5856 16 6 2.5727 -1.4092 4.2401 17 6 2.8842 -2.5537 3.2547 18 6 1.6527 -2.8393 2.4398 19 8 1.6189 -2.1009 1.2018 20 1 -0.3633 -1.0240 -0.0862 21 1 -0.3635 0.4374 0.9299 22 1 -0.3633 0.5867 -0.8438 23 1 2.9378 -0.1050 -4.2551 24 1 0.6003 -0.4604 2.8016 25 1 1.3536 1.0473 2.2249 26 1 3.5748 0.0689 3.1560 27 1 2.3888 0.6689 4.3312 28 1 3.3169 -1.4153 5.0365 29 1 1.5875 -1.5765 4.6752 30 1 3.6985 -2.2558 2.5942 31 1 3.1723 -3.4461 3.8103 32 1 1.6194 -3.9052 2.2144 33 1 0.7732 -2.5771 3.0279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:05 Heat of formation + Delta-G solvation = -66.217113 kcal Electronic energy + Delta-G solvation = -13535.472163 eV Core-core repulsion = 11367.532716 eV Total energy + Delta-G solvation = -2167.939447 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.05601 -34.79483 -33.97758 -31.95238 -29.93815 -26.65101 -25.33775 -24.40875 -20.92905 -20.37358 -18.60960 -17.02823 -15.90095 -15.58764 -14.61041 -14.06613 -13.72887 -13.29052 -12.87036 -12.65354 -12.32132 -12.24399 -12.02377 -11.32521 -10.94700 -10.93071 -10.56646 -10.54297 -10.34790 -10.13890 -9.94655 -9.70342 -9.18296 -8.90962 -8.54436 -8.39127 -5.93995 -3.90130 3.33537 3.42108 3.43309 4.47323 4.52426 4.88977 5.00322 5.18151 5.32813 5.46892 5.50185 5.71603 5.83480 5.86654 6.10365 6.14064 6.21913 6.30698 6.31816 6.36808 6.47216 6.51818 6.58321 6.67819 6.94216 7.03309 7.27134 7.60455 7.87037 8.17717 8.72910 9.21105 9.69492 11.20039 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047189 B = 0.011229 C = 0.010426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.214425 B = 2492.861230 C = 2684.842253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.012 3.988 3 H 0.038 0.962 4 C -0.495 4.495 5 H 0.081 0.919 6 C 0.065 3.935 7 N -0.905 5.905 8 Si 0.871 3.129 9 H -0.278 1.278 10 H -0.291 1.291 11 H -0.266 1.266 12 C 0.109 3.891 13 H 0.049 0.951 14 C -0.150 4.150 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.155 4.155 18 C 0.061 3.939 19 O -0.367 6.367 20 H 0.052 0.948 21 H 0.020 0.980 22 H 0.037 0.963 23 H 0.261 0.739 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 0.435 14.040 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.007 4.007 3 H 0.056 0.944 4 C -0.533 4.533 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.544 5.544 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.191 1.191 12 C 0.052 3.948 13 H 0.067 0.933 14 C -0.187 4.187 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.193 4.193 18 C -0.016 4.016 19 O -0.286 6.286 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.081 0.389 13.675 13.723 hybrid contribution 0.131 1.131 0.183 1.153 sum -0.950 1.520 13.858 13.974 Atomic orbital electron populations 1.21947 0.98713 1.00785 0.97758 1.19362 0.92995 0.94811 0.93543 0.94440 1.21030 1.41670 0.96016 0.94598 0.90057 1.25095 0.95188 0.97777 0.95475 1.69911 1.47444 1.35431 1.01641 0.86949 0.78839 0.87263 0.77029 1.20373 1.21691 1.19076 1.21981 0.97290 0.80815 0.94699 0.93341 1.22118 0.98620 1.01851 0.96137 1.20691 1.00123 0.97091 0.98278 1.20625 1.01343 0.95333 0.98057 1.21966 1.00034 0.98556 0.98735 1.22165 0.95759 0.96260 0.87444 1.88463 1.87958 1.23303 1.28876 0.92926 0.96134 0.94381 0.92933 0.91489 0.90932 0.91953 0.92588 0.92554 0.92389 0.90503 0.91402 0.90611 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.83 37.16 0.33 -2.66 16 2 C 0.01 0.28 1.62 -91.77 -0.15 0.13 16 3 H 0.04 0.90 5.23 -51.92 -0.27 0.63 16 4 C -0.50 -14.31 8.62 -34.44 -0.30 -14.61 16 5 H 0.08 2.62 7.61 -52.49 -0.40 2.22 16 6 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 7 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 8 Si 0.87 21.87 26.99 -169.99 -4.59 17.28 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.27 -6.36 6.82 56.52 0.39 -5.97 16 12 C 0.11 2.26 1.91 -28.02 -0.05 2.21 16 13 H 0.05 1.04 6.69 -51.93 -0.35 0.69 16 14 C -0.15 -2.48 3.86 -27.39 -0.11 -2.59 16 15 C -0.12 -1.72 5.33 -29.30 -0.16 -1.87 16 16 C -0.12 -1.45 5.33 -29.30 -0.16 -1.60 16 17 C -0.16 -2.15 5.61 -27.40 -0.15 -2.30 16 18 C 0.06 0.98 6.27 35.86 0.22 1.20 16 19 O -0.37 -7.82 9.27 -35.23 -0.33 -8.14 16 20 H 0.05 1.20 7.89 -51.93 -0.41 0.79 16 21 H 0.02 0.38 6.84 -51.93 -0.36 0.03 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.07 1.08 7.07 -51.93 -0.37 0.71 16 25 H 0.07 1.19 7.48 -51.93 -0.39 0.80 16 26 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 27 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.68 7.55 -51.93 -0.39 0.29 16 30 H 0.08 1.20 7.16 -51.93 -0.37 0.82 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.57 6.67 -51.93 -0.35 0.22 16 LS Contribution 250.84 15.07 3.78 3.78 Total: -1.00 -31.01 250.84 -6.28 -37.29 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.31 Total: -2.28 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.62 Total: -20.28 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.77 Total: -27.65 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.33 Total: -8.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.59 Total: 17.28 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.01 -6.28 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.929 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds