Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46926 * 2 1 4 4 C 1.50691 * 109.47347 * 239.99431 * 2 1 3 5 5 H 1.07996 * 120.00322 * 275.03010 * 4 2 1 6 6 C 1.37879 * 119.99990 * 95.02857 * 4 2 1 7 7 N 1.31510 * 120.00334 * 184.89342 * 6 4 2 8 8 Si 1.86800 * 120.00006 * 4.89086 * 6 4 2 9 9 H 1.48503 * 109.46937 * 84.79259 * 8 6 4 10 10 H 1.48501 * 109.47145 * 204.79032 * 8 6 4 11 11 H 1.48498 * 109.47217 * 324.79262 * 8 6 4 12 12 C 1.53000 * 109.46905 * 119.99301 * 2 1 3 13 13 H 1.09000 * 108.70371 * 181.62990 * 12 2 1 14 14 C 1.50418 * 108.82098 * 300.00304 * 12 2 1 15 15 C 1.54202 * 108.89224 * 213.49235 * 14 12 2 16 16 C 1.46284 * 112.06891 * 282.13213 * 15 14 12 17 17 C 1.54204 * 112.07292 * 60.89524 * 16 15 14 18 18 C 1.50405 * 108.77048 * 282.18488 * 17 16 15 19 19 O 1.44191 * 112.77690 * 92.57627 * 18 17 16 20 20 H 1.08997 * 109.46949 * 175.19008 * 1 2 3 21 21 H 1.09000 * 109.47790 * 295.19384 * 1 2 3 22 22 H 1.09000 * 109.46852 * 55.18974 * 1 2 3 23 23 H 0.96999 * 120.00499 * 179.97438 * 7 6 4 24 24 H 1.09007 * 109.58565 * 93.63476 * 14 12 2 25 25 H 1.09000 * 109.58838 * 333.35114 * 14 12 2 26 26 H 1.08998 * 108.96527 * 42.80172 * 15 14 12 27 27 H 1.09008 * 108.96217 * 161.55378 * 15 14 12 28 28 H 1.09003 * 108.96114 * 181.55877 * 16 15 14 29 29 H 1.08996 * 108.96497 * 300.31275 * 16 15 14 30 30 H 1.09001 * 109.58778 * 41.97382 * 17 16 15 31 31 H 1.09000 * 109.58920 * 162.25663 * 17 16 15 32 32 H 1.08999 * 108.82839 * 213.42690 * 18 17 16 33 33 H 1.08998 * 108.82485 * 331.84025 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1351 -1.7855 -1.2290 6 6 2.3609 0.0120 -2.3578 7 7 2.7070 -0.6132 -3.4618 8 14 2.3142 1.8790 -2.3172 9 1 3.5992 2.3947 -1.7804 10 1 2.1081 2.3990 -3.6929 11 1 1.1983 2.3274 -1.4462 12 6 2.0400 -0.7211 1.2493 13 1 3.1295 -0.6885 1.2515 14 6 1.5305 -0.0006 2.4675 15 6 2.5876 -0.1011 3.5856 16 6 2.5727 -1.4092 4.2401 17 6 2.8842 -2.5537 3.2547 18 6 1.6527 -2.8393 2.4398 19 8 1.6189 -2.1009 1.2018 20 1 -0.3633 -1.0240 -0.0862 21 1 -0.3635 0.4374 0.9299 22 1 -0.3633 0.5867 -0.8438 23 1 2.9378 -0.1050 -4.2551 24 1 0.6003 -0.4604 2.8016 25 1 1.3536 1.0473 2.2249 26 1 3.5748 0.0689 3.1560 27 1 2.3888 0.6689 4.3312 28 1 3.3169 -1.4153 5.0365 29 1 1.5875 -1.5765 4.6752 30 1 3.6985 -2.2558 2.5942 31 1 3.1723 -3.4461 3.8103 32 1 1.6194 -3.9052 2.2144 33 1 0.7732 -2.5771 3.0279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = -86.361668 kcal Electronic energy + Delta-G solvation = -13536.345697 eV Core-core repulsion = 11367.532716 eV Total energy + Delta-G solvation = -2168.812981 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.44052 -36.40091 -35.44718 -33.96587 -31.50310 -28.00281 -27.25616 -25.97663 -22.55562 -21.47256 -20.22260 -19.07093 -17.48297 -17.05354 -16.20886 -15.69699 -15.03254 -14.81343 -14.47341 -14.16336 -14.03060 -13.78638 -13.50878 -12.89924 -12.74418 -12.45761 -12.36195 -11.78841 -11.74578 -11.62640 -11.43199 -11.28080 -11.01723 -10.82680 -10.54904 -10.11025 -8.21639 -6.23241 1.35444 1.37464 1.48332 2.39119 3.02050 3.17410 3.81386 3.91939 4.05197 4.15927 4.28282 4.42939 4.57379 4.63198 4.74336 4.82603 4.83875 4.94240 4.99186 5.12832 5.18083 5.21265 5.25342 5.30086 5.41125 5.46040 5.49214 5.75125 5.81638 6.40901 6.72119 6.89648 7.40049 8.96443 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047189 B = 0.011229 C = 0.010426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.214425 B = 2492.861230 C = 2684.842253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.004 3.996 3 H 0.045 0.955 4 C -0.499 4.499 5 H 0.027 0.973 6 C -0.001 4.001 7 N -0.959 5.959 8 Si 0.943 3.057 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.241 1.241 12 C 0.115 3.885 13 H 0.029 0.971 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.153 4.153 18 C 0.052 3.948 19 O -0.408 6.408 20 H 0.035 0.965 21 H 0.059 0.941 22 H 0.030 0.970 23 H 0.262 0.738 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 2.240 16.811 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.015 4.015 3 H 0.063 0.937 4 C -0.537 4.537 5 H 0.046 0.954 6 C -0.196 4.196 7 N -0.600 5.600 8 Si 0.766 3.234 9 H -0.190 1.190 10 H -0.216 1.216 11 H -0.164 1.164 12 C 0.058 3.942 13 H 0.047 0.953 14 C -0.182 4.182 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.191 4.191 18 C -0.024 4.024 19 O -0.328 6.328 20 H 0.054 0.946 21 H 0.077 0.923 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.692 2.185 16.481 16.711 hybrid contribution 0.323 0.398 -0.684 0.855 sum -1.369 2.583 15.797 16.065 Atomic orbital electron populations 1.21800 0.97122 1.00020 0.99451 1.19425 0.94221 0.94952 0.92892 0.93671 1.21244 1.41456 0.93964 0.97047 0.95428 1.26062 0.94890 1.03839 0.94774 1.70091 1.49394 1.37842 1.02661 0.85797 0.80168 0.79894 0.77501 1.18955 1.21648 1.16415 1.21775 0.96174 0.81090 0.95177 0.95304 1.22039 0.99738 1.01401 0.95017 1.20681 0.98493 0.98839 0.97855 1.20634 1.02907 0.93714 0.97920 1.21951 0.97908 1.00563 0.98637 1.22449 0.97740 0.95940 0.86243 1.88395 1.88151 1.23957 1.32318 0.94593 0.92252 0.95114 0.92873 0.90650 0.90257 0.92964 0.89838 0.90211 0.90979 0.93020 0.88850 0.90140 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 8.83 71.98 0.64 -4.81 16 2 C 0.00 0.18 1.62 -11.54 -0.02 0.16 16 3 H 0.05 2.07 5.23 -2.38 -0.01 2.06 16 4 C -0.50 -29.91 8.62 25.60 0.22 -29.69 16 5 H 0.03 1.89 7.61 -2.91 -0.02 1.87 16 6 C 0.00 -0.04 5.47 84.66 0.46 0.43 16 7 N -0.96 -62.55 13.96 21.45 0.30 -62.25 16 8 Si 0.94 45.04 26.99 68.60 1.85 46.89 16 9 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.24 -10.45 6.82 99.48 0.68 -9.77 16 12 C 0.11 4.71 1.91 29.76 0.06 4.77 16 13 H 0.03 1.27 6.69 -2.39 -0.02 1.25 16 14 C -0.14 -4.37 3.86 30.17 0.12 -4.26 16 15 C -0.12 -2.92 5.33 28.93 0.15 -2.77 16 16 C -0.11 -2.42 5.33 28.93 0.15 -2.27 16 17 C -0.15 -3.94 5.61 30.16 0.17 -3.77 16 18 C 0.05 1.63 6.27 71.14 0.45 2.07 16 19 O -0.41 -17.65 9.27 -148.98 -1.38 -19.03 16 20 H 0.03 1.63 7.89 -2.39 -0.02 1.61 16 21 H 0.06 2.08 6.84 -2.39 -0.02 2.07 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 24 H 0.07 2.16 7.07 -2.38 -0.02 2.14 16 25 H 0.08 2.29 7.48 -2.39 -0.02 2.27 16 26 H 0.05 1.37 7.56 -2.39 -0.02 1.35 16 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.36 7.55 -2.39 -0.02 1.34 16 30 H 0.05 1.59 7.16 -2.39 -0.02 1.58 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 1.52 6.67 -2.39 -0.02 1.50 16 Total: -1.00 -70.13 250.84 4.20 -65.93 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.04 Total: 8.59 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 2.40 Total: -40.13 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.30 Total: -62.25 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.38 Total: -19.03 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.85 Total: 46.89 kcal Total: -70.13 4.20 -65.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.433 kcal (2) G-P(sol) polarization free energy of solvation -70.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds