Wall clock time and date at job start Mon Mar 30 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47495 * 2 1 4 4 C 1.50703 * 109.47470 * 120.00113 * 2 1 3 5 5 H 1.08001 * 120.00258 * 119.99826 * 4 2 1 6 6 C 1.37877 * 119.99610 * 300.00272 * 4 2 1 7 7 N 1.31517 * 120.00258 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00022 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46762 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47516 * 119.99559 * 8 6 4 11 11 H 1.48504 * 109.46811 * 240.00084 * 8 6 4 12 12 C 1.53004 * 109.47345 * 240.00157 * 2 1 3 13 13 H 1.08998 * 109.59932 * 185.31436 * 12 2 1 14 14 C 1.54111 * 109.59753 * 64.99806 * 12 2 1 15 15 C 1.46283 * 112.20185 * 160.51849 * 14 12 2 16 16 C 1.54207 * 111.98685 * 61.41387 * 15 14 12 17 17 C 1.50622 * 109.06877 * 282.48263 * 16 15 14 18 18 C 1.53813 * 112.46950 * 90.32380 * 17 16 15 19 19 O 1.40326 * 109.72336 * 305.70438 * 12 2 1 20 20 H 1.09000 * 109.46872 * 59.99789 * 1 2 3 21 21 H 1.08992 * 109.46895 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47199 * 299.99876 * 1 2 3 23 23 H 0.97005 * 120.00025 * 179.97438 * 7 6 4 24 24 H 1.08998 * 108.94045 * 39.81906 * 14 12 2 25 25 H 1.09001 * 108.86325 * 281.17002 * 14 12 2 26 26 H 1.08995 * 108.98007 * 300.77246 * 15 14 12 27 27 H 1.09004 * 108.91070 * 182.01400 * 15 14 12 28 28 H 1.09000 * 109.53669 * 42.35957 * 16 15 14 29 29 H 1.09002 * 109.54128 * 162.60286 * 16 15 14 30 30 H 1.09001 * 108.88355 * 211.09342 * 17 16 15 31 31 H 1.09005 * 108.87944 * 329.55337 * 17 16 15 32 32 H 1.09000 * 108.69946 * 196.86733 * 18 17 16 33 33 H 1.09003 * 108.69696 * 78.90195 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1475 -2.2862 3.6038 10 1 3.1473 -0.1858 4.8160 11 1 1.1678 -1.5866 4.8165 12 6 2.0400 -0.7212 -1.2493 13 1 3.1258 -0.8055 -1.2051 14 6 1.6338 0.0724 -2.5063 15 6 2.4457 -0.2824 -3.6703 16 6 2.2920 -1.7691 -4.0500 17 6 3.1067 -2.6065 -3.0995 18 6 2.3014 -3.0457 -1.8647 19 8 1.4711 -2.0019 -1.3222 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7088 1.1613 3.4844 24 1 1.7502 1.1373 -2.3054 25 1 0.5868 -0.1328 -2.7296 26 1 3.4932 -0.0802 -3.4468 27 1 2.1388 0.3330 -4.5160 28 1 1.2427 -2.0562 -3.9813 29 1 2.6475 -1.9238 -5.0687 30 1 3.4592 -3.4942 -3.6247 31 1 3.9697 -2.0277 -2.7703 32 1 2.9970 -3.3754 -1.0930 33 1 1.6673 -3.8877 -2.1425 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:06 Heat of formation + Delta-G solvation = -86.692399 kcal Electronic energy + Delta-G solvation = -13529.980333 eV Core-core repulsion = 11361.153010 eV Total energy + Delta-G solvation = -2168.827322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42720 -36.27647 -35.53365 -33.78550 -31.34540 -27.39042 -27.25803 -26.19264 -22.87986 -21.33440 -20.40878 -18.31357 -17.69220 -16.93740 -16.21719 -15.85993 -15.10074 -14.70590 -14.50545 -13.99385 -13.89325 -13.43955 -13.13564 -12.88595 -12.70041 -12.58113 -12.14818 -12.02874 -11.90120 -11.56834 -11.43219 -11.18126 -10.83049 -10.75509 -10.46539 -9.93802 -8.05931 -6.18124 1.38796 1.40372 1.51872 2.44216 3.11130 3.24444 3.83595 4.01944 4.07071 4.22137 4.29856 4.50209 4.64911 4.72113 4.80090 4.92499 5.03013 5.05328 5.10362 5.22955 5.28450 5.31701 5.34331 5.39744 5.50288 5.55318 5.62724 5.92538 6.15118 6.40934 6.87598 6.91068 7.47984 8.98897 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049474 B = 0.010755 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.813901 B = 2602.746441 C = 2928.273322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.036 3.964 3 H 0.008 0.992 4 C -0.516 4.516 5 H 0.045 0.955 6 C 0.008 3.992 7 N -0.920 5.920 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.120 3.880 13 H 0.034 0.966 14 C -0.138 4.138 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.148 4.148 18 C 0.053 3.947 19 O -0.389 6.389 20 H 0.026 0.974 21 H 0.023 0.977 22 H 0.048 0.952 23 H 0.259 0.741 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 -4.985 -11.591 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.018 3.982 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.063 0.937 6 C -0.190 4.190 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.207 1.207 12 C 0.062 3.938 13 H 0.052 0.948 14 C -0.176 4.176 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.185 4.185 18 C -0.023 4.023 19 O -0.308 6.308 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.256 -4.912 -11.401 12.834 hybrid contribution 0.413 -0.136 1.165 1.243 sum 3.670 -5.048 -10.236 11.989 Atomic orbital electron populations 1.21453 0.98173 0.98526 0.99016 1.18875 0.93675 0.93858 0.91823 0.97415 1.21427 1.30434 1.11661 0.91893 0.93686 1.25729 0.95580 0.95855 1.01834 1.70032 1.38057 1.24283 1.23659 0.85589 0.78146 0.78716 0.79703 1.19415 1.20405 1.20731 1.21754 0.95041 0.82900 0.94134 0.94771 1.21086 1.00863 0.99815 0.95815 1.20632 0.99856 0.97337 0.97484 1.21287 1.00490 0.93967 0.99144 1.21912 0.98814 1.01610 0.96172 1.23032 0.94553 0.90219 0.94509 1.87442 1.42104 1.17961 1.83303 0.95481 0.95786 0.93263 0.93137 0.92410 0.92301 0.92419 0.90642 0.92236 0.89532 0.88721 0.92645 0.94982 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.93 8.56 71.98 0.62 -5.32 16 2 C 0.04 1.91 2.09 -11.54 -0.02 1.88 16 3 H 0.01 0.45 8.04 -2.38 -0.02 0.43 16 4 C -0.52 -29.80 8.35 25.60 0.21 -29.59 16 5 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -55.05 11.32 21.45 0.24 -54.81 16 8 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.12 5.18 1.79 30.97 0.06 5.23 16 13 H 0.03 1.49 6.98 -2.39 -0.02 1.47 16 14 C -0.14 -4.89 4.14 28.90 0.12 -4.77 16 15 C -0.12 -3.15 5.34 28.93 0.15 -2.99 16 16 C -0.11 -2.70 5.62 30.23 0.17 -2.53 16 17 C -0.15 -3.74 5.32 30.10 0.16 -3.58 16 18 C 0.05 1.73 6.67 72.26 0.48 2.21 16 19 O -0.39 -16.55 8.69 -143.49 -1.25 -17.80 16 20 H 0.03 1.23 7.04 -2.39 -0.02 1.22 16 21 H 0.02 1.24 7.56 -2.39 -0.02 1.22 16 22 H 0.05 2.81 6.07 -2.39 -0.01 2.79 16 23 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 24 H 0.06 2.07 7.90 -2.39 -0.02 2.06 16 25 H 0.06 2.13 7.56 -2.39 -0.02 2.11 16 26 H 0.06 1.55 7.60 -2.39 -0.02 1.53 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.57 7.82 -2.39 -0.02 1.55 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.49 6.84 -2.38 -0.02 1.47 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -63.51 254.21 4.47 -59.04 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.06 Total: 4.76 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 2.40 Total: -38.56 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.24 Total: -54.81 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.25 Total: -17.80 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -63.51 4.47 -59.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.653 kcal (2) G-P(sol) polarization free energy of solvation -63.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds