Wall clock time and date at job start Mon Mar 30 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00679 * 2 1 3 13 13 H 1.09007 * 109.84118 * 300.00063 * 12 2 1 14 14 C 1.51077 * 109.85746 * 60.95172 * 12 2 1 15 15 C 1.53382 * 111.34496 * 213.91638 * 14 12 2 16 16 C 1.54146 * 111.68419 * 319.34592 * 15 14 12 17 17 C 1.50983 * 112.81099 * 318.33121 * 16 15 14 18 18 C 1.54628 * 109.21270 * 92.33598 * 17 16 15 19 19 O 1.36326 * 111.08322 * 285.34363 * 18 17 16 20 20 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 21 21 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 22 22 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.11540 * 334.43874 * 14 12 2 25 25 H 1.08992 * 109.11351 * 93.51057 * 14 12 2 26 26 H 1.08997 * 109.07204 * 198.74358 * 15 14 12 27 27 H 1.09005 * 108.98703 * 79.88404 * 15 14 12 28 28 H 1.09004 * 108.81504 * 197.47693 * 16 15 14 29 29 H 1.08996 * 108.73516 * 79.13483 * 16 15 14 30 30 H 1.08998 * 109.51249 * 332.41244 * 17 16 15 31 31 H 1.09001 * 109.55473 * 212.27741 * 17 16 15 32 32 H 1.09000 * 109.15319 * 164.93428 * 18 17 16 33 33 H 1.09005 * 109.11186 * 45.72931 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0400 -0.7211 -1.2494 13 1 1.6800 -1.7500 -1.2556 14 6 1.5606 -0.0021 -2.4885 15 6 1.2825 -0.9856 -3.6322 16 6 2.3549 -2.0903 -3.7069 17 6 3.7538 -1.5634 -3.4946 18 6 4.1143 -1.6667 -1.9945 19 8 3.4737 -0.7066 -1.2690 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.7006 1.1552 3.4844 24 1 0.6453 0.5414 -2.2542 25 1 2.3241 0.7073 -2.8074 26 1 1.2677 -0.4398 -4.5756 27 1 0.3074 -1.4466 -3.4743 28 1 2.3031 -2.5650 -4.6868 29 1 2.1412 -2.8379 -2.9430 30 1 3.8020 -0.5211 -3.8098 31 1 4.4588 -2.1538 -4.0799 32 1 5.1911 -1.5454 -1.8763 33 1 3.8222 -2.6494 -1.6241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:08 Heat of formation + Delta-G solvation = -66.523977 kcal Electronic energy + Delta-G solvation = -13502.942522 eV Core-core repulsion = 11334.989769 eV Total energy + Delta-G solvation = -2167.952754 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22502 -34.59534 -34.24824 -31.91167 -29.41573 -25.91295 -25.23460 -24.55549 -21.53335 -20.03931 -18.75863 -16.21824 -15.83917 -15.51576 -14.60305 -14.49069 -14.23202 -13.23410 -12.81332 -12.57189 -12.10013 -11.66494 -11.43019 -10.98523 -10.94286 -10.73896 -10.64558 -10.38240 -10.14868 -10.03694 -9.96229 -9.55828 -9.17091 -8.80335 -8.44159 -8.22188 -5.88841 -3.92431 3.37276 3.43161 3.46759 4.52318 4.59361 5.08339 5.19762 5.28018 5.43522 5.53254 5.64236 5.76362 5.90713 6.13943 6.15843 6.20216 6.29922 6.37871 6.47864 6.51103 6.62447 6.77503 6.88972 6.97328 7.20083 7.35639 7.81757 7.97205 8.17965 8.52713 8.64871 9.09501 9.70358 11.17795 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047881 B = 0.010838 C = 0.009451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.645099 B = 2582.774731 C = 2962.016315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.047 3.953 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.054 0.946 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.112 3.888 13 H 0.046 0.954 14 C -0.154 4.154 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.164 4.164 18 C 0.080 3.920 19 O -0.369 6.369 20 H 0.087 0.913 21 H 0.013 0.987 22 H 0.025 0.975 23 H 0.258 0.742 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 -3.909 -10.173 11.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.073 0.927 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.056 3.944 13 H 0.065 0.935 14 C -0.191 4.191 15 C -0.154 4.154 16 C -0.159 4.159 17 C -0.202 4.202 18 C 0.001 3.999 19 O -0.287 6.287 20 H 0.105 0.895 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.802 -3.670 -9.937 10.745 hybrid contribution 0.191 -0.750 0.580 0.967 sum 1.994 -4.420 -9.356 10.538 Atomic orbital electron populations 1.21861 0.97919 0.99089 1.00471 1.18732 0.92056 0.96358 0.89995 0.94894 1.21088 1.29884 1.12123 0.90294 0.92725 1.24942 0.95336 0.95145 0.98874 1.69877 1.37333 1.23264 1.23072 0.86621 0.78529 0.80051 0.82921 1.20782 1.21422 1.20095 1.22189 0.78386 0.98484 0.95351 0.93549 1.22189 1.02437 0.98867 0.95655 1.21843 0.98166 0.96870 0.98544 1.21439 0.94943 0.98542 1.00980 1.22349 0.96539 1.01938 0.99346 1.21618 0.96821 0.92152 0.89270 1.86429 1.20975 1.51888 1.69414 0.89450 0.96800 0.95604 0.93205 0.90536 0.91805 0.92908 0.92442 0.92901 0.92255 0.91225 0.92099 0.90347 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.72 37.16 0.32 -2.95 16 2 C 0.05 1.21 2.08 -91.77 -0.19 1.02 16 3 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.50 -14.05 8.26 -34.44 -0.28 -14.33 16 5 H 0.05 1.56 7.73 -52.49 -0.41 1.15 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -26.16 11.31 55.43 0.63 -25.53 16 8 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.11 2.42 1.76 -27.70 -0.05 2.37 16 13 H 0.05 1.01 6.68 -51.92 -0.35 0.66 16 14 C -0.15 -2.80 4.86 -27.50 -0.13 -2.93 16 15 C -0.12 -1.75 5.92 -25.93 -0.15 -1.90 16 16 C -0.12 -1.73 5.31 -27.15 -0.14 -1.88 16 17 C -0.16 -2.37 5.67 -26.89 -0.15 -2.52 16 18 C 0.08 1.38 6.39 38.01 0.24 1.63 16 19 O -0.37 -8.04 9.22 -20.78 -0.19 -8.23 16 20 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 21 H 0.01 0.28 6.07 -51.93 -0.32 -0.03 16 22 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.08 1.41 5.57 -51.93 -0.29 1.12 16 25 H 0.06 1.16 7.32 -51.93 -0.38 0.78 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.90 6.60 -51.93 -0.34 0.56 16 30 H 0.07 1.04 7.16 -51.93 -0.37 0.67 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.03 0.47 7.68 -51.93 -0.40 0.07 16 LS Contribution 251.82 15.07 3.79 3.79 Total: -1.00 -29.22 251.82 -6.68 -35.90 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.26 Total: -2.90 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.64 Total: -19.97 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.63 Total: -25.53 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.19 Total: -8.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.22 -6.68 -35.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.621 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds