Wall clock time and date at job start Mon Mar 30 2020 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00679 * 2 1 3 13 13 H 1.09007 * 109.84118 * 300.00063 * 12 2 1 14 14 C 1.51077 * 109.85746 * 60.95172 * 12 2 1 15 15 C 1.53382 * 111.34496 * 213.91638 * 14 12 2 16 16 C 1.54146 * 111.68419 * 319.34592 * 15 14 12 17 17 C 1.50983 * 112.81099 * 318.33121 * 16 15 14 18 18 C 1.54628 * 109.21270 * 92.33598 * 17 16 15 19 19 O 1.36326 * 111.08322 * 285.34363 * 18 17 16 20 20 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 21 21 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 22 22 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.11540 * 334.43874 * 14 12 2 25 25 H 1.08992 * 109.11351 * 93.51057 * 14 12 2 26 26 H 1.08997 * 109.07204 * 198.74358 * 15 14 12 27 27 H 1.09005 * 108.98703 * 79.88404 * 15 14 12 28 28 H 1.09004 * 108.81504 * 197.47693 * 16 15 14 29 29 H 1.08996 * 108.73516 * 79.13483 * 16 15 14 30 30 H 1.08998 * 109.51249 * 332.41244 * 17 16 15 31 31 H 1.09001 * 109.55473 * 212.27741 * 17 16 15 32 32 H 1.09000 * 109.15319 * 164.93428 * 18 17 16 33 33 H 1.09005 * 109.11186 * 45.72931 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 6 2.0400 -0.7211 -1.2494 13 1 1.6800 -1.7500 -1.2556 14 6 1.5606 -0.0021 -2.4885 15 6 1.2825 -0.9856 -3.6322 16 6 2.3549 -2.0903 -3.7069 17 6 3.7538 -1.5634 -3.4946 18 6 4.1143 -1.6667 -1.9945 19 8 3.4737 -0.7066 -1.2690 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.7006 1.1552 3.4844 24 1 0.6453 0.5414 -2.2542 25 1 2.3241 0.7073 -2.8074 26 1 1.2677 -0.4398 -4.5756 27 1 0.3074 -1.4466 -3.4743 28 1 2.3031 -2.5650 -4.6868 29 1 2.1412 -2.8379 -2.9430 30 1 3.8020 -0.5211 -3.8098 31 1 4.4588 -2.1538 -4.0799 32 1 5.1911 -1.5454 -1.8763 33 1 3.8222 -2.6494 -1.6241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:07 Heat of formation + Delta-G solvation = -83.308267 kcal Electronic energy + Delta-G solvation = -13503.670344 eV Core-core repulsion = 11334.989769 eV Total energy + Delta-G solvation = -2168.680575 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73378 -36.48322 -35.60647 -33.77334 -31.11436 -27.56136 -26.94574 -26.23985 -23.08423 -21.68170 -20.23009 -18.30696 -17.37448 -17.17133 -16.29752 -16.04319 -15.62152 -14.86981 -14.37439 -14.23808 -13.66238 -13.25887 -12.97405 -12.88476 -12.68570 -12.41167 -12.29022 -12.14850 -12.07625 -11.52882 -11.29283 -10.99217 -10.95535 -10.82254 -10.40424 -10.03706 -8.05911 -6.17456 1.40477 1.41418 1.51462 2.45120 3.05764 3.24847 3.88567 4.02163 4.08397 4.20801 4.27044 4.46089 4.58882 4.69476 4.79749 4.92207 4.96335 4.98593 5.05875 5.11320 5.19406 5.26649 5.34532 5.38450 5.48701 5.52705 5.64854 5.92540 6.11202 6.40711 6.89863 7.07838 7.48878 8.99189 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047881 B = 0.010838 C = 0.009451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.645099 B = 2582.774731 C = 2962.016315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.041 3.959 3 H -0.005 1.005 4 C -0.516 4.516 5 H 0.045 0.955 6 C 0.008 3.992 7 N -0.920 5.920 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.120 3.880 13 H 0.043 0.957 14 C -0.148 4.148 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.154 4.154 18 C 0.067 3.933 19 O -0.400 6.400 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.029 0.971 23 H 0.260 0.740 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -4.973 -11.488 12.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.023 3.977 3 H 0.013 0.987 4 C -0.554 4.554 5 H 0.063 0.937 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.194 1.194 12 C 0.064 3.936 13 H 0.061 0.939 14 C -0.185 4.185 15 C -0.151 4.151 16 C -0.161 4.161 17 C -0.192 4.192 18 C -0.011 4.011 19 O -0.319 6.319 20 H 0.077 0.923 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.089 -4.742 -11.264 12.399 hybrid contribution 0.153 -0.405 0.989 1.080 sum 2.242 -5.147 -10.275 11.709 Atomic orbital electron populations 1.21674 0.96886 0.99225 1.00440 1.18721 0.93059 0.94418 0.91548 0.98661 1.21376 1.30035 1.12131 0.91842 0.93688 1.25712 0.95533 0.95909 1.01787 1.70007 1.38011 1.24291 1.23750 0.85646 0.78046 0.79112 0.79380 1.20486 1.20601 1.19430 1.21906 0.78824 0.97897 0.94937 0.93928 1.22074 1.01769 0.99331 0.95358 1.21830 0.98774 0.96552 0.97918 1.21471 0.94380 0.97996 1.02223 1.22252 0.97501 1.02375 0.97083 1.21909 0.97225 0.90916 0.91088 1.86364 1.20947 1.53475 1.71076 0.92300 0.93987 0.95202 0.93099 0.91094 0.92127 0.90556 0.91845 0.89945 0.93533 0.91553 0.89156 0.88908 0.95912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.72 71.98 0.63 -5.44 16 2 C 0.04 2.16 2.08 -11.54 -0.02 2.13 16 3 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 4 C -0.52 -29.84 8.26 25.60 0.21 -29.63 16 5 H 0.04 2.62 7.73 -2.91 -0.02 2.60 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -54.76 11.31 21.45 0.24 -54.52 16 8 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.12 5.21 1.76 29.97 0.05 5.27 16 13 H 0.04 1.85 6.68 -2.38 -0.02 1.83 16 14 C -0.15 -5.21 4.86 30.10 0.15 -5.06 16 15 C -0.11 -3.07 5.92 31.11 0.18 -2.88 16 16 C -0.12 -3.13 5.31 30.33 0.16 -2.97 16 17 C -0.15 -4.02 5.67 30.49 0.17 -3.85 16 18 C 0.07 2.22 6.39 72.54 0.46 2.68 16 19 O -0.40 -17.46 9.22 -97.28 -0.90 -18.36 16 20 H 0.06 3.20 6.06 -2.38 -0.01 3.19 16 21 H 0.04 1.75 6.07 -2.38 -0.01 1.74 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.07 2.54 5.57 -2.39 -0.01 2.52 16 25 H 0.06 2.15 7.32 -2.39 -0.02 2.14 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.30 6.60 -2.39 -0.02 1.29 16 30 H 0.07 1.80 7.16 -2.39 -0.02 1.78 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.02 0.77 7.68 -2.38 -0.02 0.75 16 Total: -1.00 -63.25 251.82 4.88 -58.37 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.07 Total: 5.95 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 2.44 Total: -38.82 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.24 Total: -54.52 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.90 Total: -18.36 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -63.25 4.88 -58.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.935 kcal (2) G-P(sol) polarization free energy of solvation -63.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds