Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47166 * 2 1 4 4 C 1.52998 * 109.46925 * 239.99550 * 2 1 3 5 5 C 1.53002 * 109.46925 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47187 * 60.00505 * 5 4 2 7 7 C 1.53007 * 109.46640 * 299.99726 * 6 5 4 8 8 H 1.09000 * 109.46811 * 300.00147 * 7 6 5 9 9 C 1.53001 * 109.46640 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.46898 * 119.99803 * 2 1 3 11 11 O 1.42898 * 109.47315 * 59.99891 * 10 2 1 12 12 C 1.50693 * 109.47190 * 299.99643 * 10 2 1 13 13 H 1.07999 * 120.00277 * 269.76911 * 12 10 2 14 14 C 1.37878 * 119.99872 * 89.76979 * 12 10 2 15 15 N 1.31518 * 119.99872 * 216.25087 * 14 12 10 16 16 Si 1.86797 * 120.00209 * 36.25250 * 14 12 10 17 17 H 1.48503 * 109.47040 * 275.52957 * 16 14 12 18 18 H 1.48503 * 109.47406 * 155.52941 * 16 14 12 19 19 H 1.48503 * 109.47247 * 35.52607 * 16 14 12 20 20 H 1.09007 * 109.46896 * 300.00477 * 1 2 3 21 21 H 1.09002 * 109.47316 * 60.00233 * 1 2 3 22 22 H 1.09000 * 109.47614 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47566 * 300.00205 * 4 2 1 24 24 H 1.09002 * 109.46946 * 59.99990 * 4 2 1 25 25 H 1.09007 * 109.46896 * 179.97438 * 5 4 2 26 26 H 1.09000 * 109.47349 * 299.99693 * 5 4 2 27 27 H 1.09000 * 109.47113 * 59.99363 * 6 5 4 28 28 H 1.08992 * 109.47040 * 179.97438 * 6 5 4 29 29 H 1.08997 * 109.47479 * 305.32691 * 9 7 6 30 30 H 1.09002 * 109.46889 * 65.33296 * 9 7 6 31 31 H 1.09003 * 109.46839 * 185.32772 * 9 7 6 32 32 H 0.96695 * 113.99959 * 171.98407 * 11 10 2 33 33 H 0.97003 * 119.99466 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0805 -1.4417 -0.0003 7 6 3.5705 -0.7203 1.2490 8 1 3.9335 0.3075 1.2486 9 6 4.0816 -1.4408 2.4982 10 6 2.0400 -0.7212 1.2493 11 8 1.5636 -2.0685 1.2494 12 6 1.5377 -0.0108 2.4797 13 1 2.1232 0.7813 2.9227 14 6 0.3307 -0.3719 3.0398 15 7 -0.4495 0.5454 3.5686 16 14 -0.1965 -2.1639 3.0476 17 1 -0.8472 -2.4941 1.7542 18 1 -1.1565 -2.3927 4.1573 19 1 0.9950 -3.0296 3.2375 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.6766 -1.7490 -1.2492 24 1 1.6766 -0.2076 -2.1392 25 1 3.9333 -1.2351 -2.1393 26 1 3.9330 0.3070 -1.2499 27 1 3.7175 -2.4694 0.0000 28 1 5.1705 -1.4417 -0.0008 29 1 3.7990 -2.4925 2.4523 30 1 5.1674 -1.3580 2.5467 31 1 3.6425 -0.9850 3.3857 32 1 1.9454 -2.6206 1.9454 33 1 -1.2988 0.2913 3.9623 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260719504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = -69.889504 kcal Electronic energy + Delta-G solvation = -14178.863843 eV Core-core repulsion = 12010.765149 eV Total energy + Delta-G solvation = -2168.098694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00089 -34.40207 -32.83167 -32.16941 -30.21321 -26.36304 -25.44353 -24.01978 -20.63593 -19.71965 -18.71919 -17.00434 -15.66508 -14.86789 -14.34362 -13.64368 -13.19610 -12.87996 -12.70198 -12.50503 -11.84852 -11.71628 -11.50268 -11.28040 -10.92672 -10.74494 -10.51710 -10.44462 -9.98141 -9.94799 -9.79900 -9.65334 -9.27953 -8.75753 -8.52880 -7.75431 -6.20435 -4.02292 3.43152 3.60983 3.65896 4.61463 5.07269 5.39094 5.46392 5.50831 5.73209 5.88265 6.00590 6.16930 6.23895 6.27884 6.31383 6.37835 6.55335 6.60624 6.65152 6.70867 6.80477 6.89936 7.06210 7.07789 7.13539 7.33947 7.55685 7.61277 7.85993 8.29994 8.78758 9.02212 9.61131 10.88286 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037833 B = 0.018090 C = 0.015637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.915888 B = 1547.437451 C = 1790.147370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 H 0.063 0.937 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.109 4.109 8 H 0.064 0.936 9 C -0.141 4.141 10 C 0.244 3.756 11 O -0.567 6.567 12 C -0.581 4.581 13 H 0.073 0.927 14 C 0.097 3.903 15 N -0.857 5.857 16 Si 0.932 3.068 17 H -0.281 1.281 18 H -0.333 1.333 19 H -0.299 1.299 20 H 0.081 0.919 21 H 0.024 0.976 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.364 0.636 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -3.516 -5.971 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.081 4.081 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.127 4.127 8 H 0.083 0.917 9 C -0.198 4.198 10 C 0.204 3.796 11 O -0.378 6.378 12 C -0.616 4.616 13 H 0.091 0.909 14 C -0.110 4.110 15 N -0.490 5.490 16 Si 0.770 3.230 17 H -0.208 1.208 18 H -0.265 1.265 19 H -0.229 1.229 20 H 0.100 0.900 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.214 0.786 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.417 -3.185 -6.392 8.964 hybrid contribution 0.059 -1.080 0.560 1.218 sum 5.476 -4.266 -5.832 9.066 Atomic orbital electron populations 1.21751 0.95713 1.01115 1.01006 1.21102 0.95959 0.98029 0.93021 0.91818 1.21652 0.94533 1.01231 0.97913 1.21479 0.96684 0.99846 0.97103 1.21573 0.98385 0.99868 0.95126 1.21732 0.99006 0.98905 0.93098 0.91715 1.21761 0.98722 0.99574 0.99728 1.19165 0.87544 0.78866 0.93979 1.86184 1.68743 1.24873 1.57987 1.21002 1.05615 1.21738 1.13217 0.90919 1.24937 0.94568 0.97843 0.93641 1.70327 1.08867 1.33669 1.36141 0.86149 0.75600 0.85946 0.75316 1.20774 1.26528 1.22889 0.90013 0.95694 0.93570 0.91932 0.93794 0.93430 0.92809 0.92188 0.93678 0.94074 0.94493 0.90813 0.78566 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.21 37.16 0.31 -2.84 16 2 C -0.06 -1.34 2.07 -90.62 -0.19 -1.53 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.12 -2.13 5.06 -26.73 -0.14 -2.26 16 5 C -0.11 -1.86 5.92 -26.73 -0.16 -2.01 16 6 C -0.11 -1.90 5.06 -26.73 -0.14 -2.04 16 7 C -0.11 -2.12 2.07 -90.59 -0.19 -2.31 16 8 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 9 C -0.14 -2.59 8.61 37.16 0.32 -2.27 16 10 C 0.24 5.51 0.32 -91.75 -0.03 5.48 16 11 O -0.57 -12.98 7.05 -35.23 -0.25 -13.23 16 12 C -0.58 -15.42 6.68 -34.44 -0.23 -15.65 16 13 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 14 C 0.10 2.69 3.60 -17.82 -0.06 2.62 16 15 N -0.86 -25.02 13.92 55.43 0.77 -24.25 16 16 Si 0.93 23.46 24.66 -169.99 -4.19 19.26 16 17 H -0.28 -7.23 6.87 56.52 0.39 -6.84 16 18 H -0.33 -8.62 7.11 56.52 0.40 -8.22 16 19 H -0.30 -7.04 5.75 56.52 0.33 -6.71 16 20 H 0.08 2.10 6.14 -51.93 -0.32 1.78 16 21 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 1.08 7.24 -51.93 -0.38 0.71 16 23 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.04 7.68 -51.93 -0.40 0.64 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.72 6.87 -51.93 -0.36 0.36 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.50 7.04 -51.93 -0.37 1.13 16 32 H 0.36 7.97 4.52 45.56 0.21 8.17 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 241.61 15.07 3.64 3.64 Total: -1.00 -28.01 241.61 -5.57 -33.57 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.04 Total: 3.80 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -0.50 Total: -22.81 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.77 Total: -24.25 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.25 Total: -13.23 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.19 Total: 19.26 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.01 -5.57 -33.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260719504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.315 kcal (2) G-P(sol) polarization free energy of solvation -28.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds