Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.43674 * 2 1 4 4 C 1.54890 * 110.48737 * 237.45755 * 2 1 3 5 5 C 1.54894 * 102.74704 * 203.38085 * 4 2 1 6 6 C 1.54265 * 104.19730 * 37.94172 * 5 4 2 7 7 C 1.53007 * 110.03244 * 95.67521 * 6 5 4 8 8 C 1.52995 * 110.03101 * 217.10251 * 6 5 4 9 9 C 1.54081 * 106.62015 * 336.27936 * 6 5 4 10 10 O 1.42905 * 110.00682 * 119.38620 * 9 6 5 11 11 C 1.50703 * 110.15902 * 240.88054 * 9 6 5 12 12 H 1.08004 * 119.99982 * 91.79704 * 11 9 6 13 13 C 1.37880 * 120.00032 * 271.79139 * 11 9 6 14 14 N 1.31512 * 120.00013 * 7.31661 * 13 11 9 15 15 Si 1.86792 * 120.00030 * 187.30697 * 13 11 9 16 16 H 1.48505 * 109.47515 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47176 * 120.00320 * 15 13 11 18 18 H 1.48501 * 109.47313 * 240.00306 * 15 13 11 19 19 H 1.08998 * 109.47198 * 177.10029 * 1 2 3 20 20 H 1.09000 * 109.47061 * 57.10008 * 1 2 3 21 21 H 1.08998 * 109.47022 * 297.10601 * 1 2 3 22 22 H 1.09004 * 110.75651 * 321.68834 * 4 2 1 23 23 H 1.08998 * 110.76218 * 84.88103 * 4 2 1 24 24 H 1.09006 * 110.48407 * 156.62066 * 5 4 2 25 25 H 1.08994 * 110.48957 * 279.12448 * 5 4 2 26 26 H 1.08998 * 109.47196 * 61.45165 * 7 6 5 27 27 H 1.08999 * 109.46851 * 181.45717 * 7 6 5 28 28 H 1.08997 * 109.46743 * 301.45110 * 7 6 5 29 29 H 1.08999 * 109.46968 * 58.54763 * 8 6 5 30 30 H 1.09001 * 109.47011 * 178.54354 * 8 6 5 31 31 H 1.08997 * 109.47517 * 298.54713 * 8 6 5 32 32 H 0.96700 * 113.99817 * 181.52477 * 10 9 6 33 33 H 0.96995 * 120.00142 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7805 -1.2231 5 6 3.4907 -1.1970 -0.7614 6 6 3.3165 -1.5414 0.7322 7 6 3.1097 -3.0479 0.9021 8 6 4.5465 -1.0884 1.5214 9 6 2.0699 -0.7773 1.2182 10 8 1.0835 -1.6989 1.6873 11 6 2.4449 0.1824 2.3180 12 1 2.7118 1.2010 2.0781 13 6 2.4473 -0.2401 3.6305 14 7 2.2639 -1.5115 3.9124 15 14 2.7113 0.9934 5.0082 16 1 2.8921 2.3495 4.4306 17 1 1.5291 0.9922 5.9069 18 1 3.9220 0.6192 5.7824 19 1 -0.3633 -1.0263 -0.0520 20 1 -0.3633 0.5582 -0.8628 21 1 -0.3633 0.4682 0.9148 22 1 1.4581 -1.6584 -1.4242 23 1 2.1221 -0.1366 -2.1011 24 1 3.8316 -2.0706 -1.3171 25 1 4.1903 -0.3705 -0.8853 26 1 3.9875 -3.5789 0.5340 27 1 2.9619 -3.2776 1.9573 28 1 2.2322 -3.3602 0.3360 29 1 4.6852 -0.0149 1.3933 30 1 4.4028 -1.3126 2.5784 31 1 5.4276 -1.6149 1.1548 32 1 0.2645 -1.2803 1.9856 33 1 2.2660 -1.8087 4.8357 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260903292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -64.935995 kcal Electronic energy + Delta-G solvation = -14163.583442 eV Core-core repulsion = 11995.699548 eV Total energy + Delta-G solvation = -2167.883894 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67845 -33.66468 -32.67704 -31.53658 -28.23656 -26.80967 -25.46818 -23.12819 -22.43134 -19.04736 -17.59461 -16.42228 -15.01768 -14.54724 -14.11786 -13.75696 -12.86261 -12.50572 -12.34485 -11.92402 -11.46686 -11.30630 -11.19846 -11.07912 -10.72926 -10.52735 -10.28995 -10.18492 -9.90570 -9.83021 -9.63167 -9.38382 -9.22444 -8.62547 -8.25403 -7.85065 -5.84251 -3.98297 3.29517 3.39436 3.42766 4.46239 5.30956 5.59656 5.65208 5.75350 6.12714 6.17330 6.29385 6.41956 6.46587 6.50262 6.58337 6.65341 6.75074 6.84139 6.90681 6.95755 7.02011 7.12872 7.30641 7.37403 7.40065 7.77487 7.84071 7.90964 8.01547 8.36946 8.93060 9.52660 9.76352 11.12348 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.016474 C = 0.014533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.201722 B = 1699.226852 C = 1926.222091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.041 4.041 7 C -0.112 4.112 8 C -0.105 4.105 9 C 0.265 3.735 10 O -0.537 6.537 11 C -0.549 4.549 12 H 0.053 0.947 13 C 0.080 3.920 14 N -0.843 5.843 15 Si 0.871 3.129 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.286 1.286 19 H 0.055 0.945 20 H 0.034 0.966 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.015 0.985 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.345 0.655 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 0.665 -5.625 5.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.041 4.041 7 C -0.169 4.169 8 C -0.162 4.162 9 C 0.225 3.775 10 O -0.339 6.339 11 C -0.587 4.587 12 H 0.071 0.929 13 C -0.125 4.125 14 N -0.478 5.478 15 Si 0.699 3.301 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.212 1.212 19 H 0.074 0.926 20 H 0.053 0.947 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.190 0.810 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.064 0.075 -5.621 5.622 hybrid contribution -0.209 1.235 0.952 1.574 sum -0.145 1.310 -4.669 4.851 Atomic orbital electron populations 1.21637 0.96585 1.00982 1.00078 1.22714 0.94678 0.99505 0.97300 0.91898 1.22483 0.96823 0.99065 0.97037 1.22510 0.96282 0.99340 0.97488 1.21108 0.96430 0.95301 0.91303 1.21486 0.97427 0.94815 1.03191 1.21619 0.93682 0.99074 1.01859 1.19212 0.84779 0.85347 0.88189 1.86453 1.26811 1.35850 1.84805 1.21561 1.48582 0.97086 0.91514 0.92872 1.24933 0.94889 0.94506 0.98208 1.70177 1.46759 1.13020 1.17815 0.86898 0.77710 0.82396 0.83123 1.19967 1.21152 1.21189 0.92644 0.94711 0.92873 0.92426 0.93753 0.93379 0.92778 0.96563 0.90655 0.94283 0.93695 0.90892 0.97152 0.81042 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.05 37.15 0.30 -2.18 16 2 C -0.12 -2.54 2.95 -88.96 -0.26 -2.80 16 3 H 0.06 1.35 7.69 -51.93 -0.40 0.95 16 4 C -0.12 -2.18 6.33 -24.74 -0.16 -2.34 16 5 C -0.12 -2.31 5.90 -25.07 -0.15 -2.46 16 6 C -0.04 -0.92 0.94 -153.28 -0.14 -1.06 16 7 C -0.11 -2.51 7.41 37.16 0.28 -2.23 16 8 C -0.11 -2.41 7.20 37.16 0.27 -2.15 16 9 C 0.27 6.26 0.91 -90.54 -0.08 6.17 16 10 O -0.54 -13.17 8.37 -35.23 -0.29 -13.47 16 11 C -0.55 -14.24 5.96 -34.44 -0.21 -14.45 16 12 H 0.05 1.42 7.59 -52.48 -0.40 1.02 16 13 C 0.08 2.11 4.20 -17.82 -0.07 2.03 16 14 N -0.84 -22.96 11.32 55.43 0.63 -22.33 16 15 Si 0.87 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H 0.05 1.00 7.37 -51.93 -0.38 0.62 16 20 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 22 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.87 7.84 -51.93 -0.41 0.46 16 25 H 0.05 1.02 7.86 -51.93 -0.41 0.61 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 1.90 7.82 -51.93 -0.41 1.49 16 28 H 0.04 0.86 7.82 -51.93 -0.41 0.45 16 29 H 0.04 1.02 7.42 -51.93 -0.39 0.64 16 30 H 0.07 1.87 6.21 -51.93 -0.32 1.54 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.35 8.14 7.47 45.56 0.34 8.48 16 33 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16 LS Contribution 252.23 15.07 3.80 3.80 Total: -1.00 -26.84 252.23 -5.94 -32.78 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.82 Total: 5.08 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -0.23 Total: -21.47 kcal Atomic # 7 Polarization: -22.96 SS G_CDS: 0.63 Total: -22.33 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.29 Total: -13.47 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.84 -5.94 -32.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.153 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds