Wall clock time and date at job start Mon Mar 30 2020 02:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.43674 * 2 1 4 4 C 1.54890 * 110.48737 * 237.45755 * 2 1 3 5 5 C 1.54894 * 102.74704 * 203.38085 * 4 2 1 6 6 C 1.54265 * 104.19730 * 37.94172 * 5 4 2 7 7 C 1.53007 * 110.03244 * 95.67521 * 6 5 4 8 8 C 1.52995 * 110.03101 * 217.10251 * 6 5 4 9 9 C 1.54081 * 106.62015 * 336.27936 * 6 5 4 10 10 O 1.42905 * 110.00682 * 119.38620 * 9 6 5 11 11 C 1.50703 * 110.15902 * 240.88054 * 9 6 5 12 12 H 1.08004 * 119.99982 * 91.79704 * 11 9 6 13 13 C 1.37880 * 120.00032 * 271.79139 * 11 9 6 14 14 N 1.31512 * 120.00013 * 7.31661 * 13 11 9 15 15 Si 1.86792 * 120.00030 * 187.30697 * 13 11 9 16 16 H 1.48505 * 109.47515 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47176 * 120.00320 * 15 13 11 18 18 H 1.48501 * 109.47313 * 240.00306 * 15 13 11 19 19 H 1.08998 * 109.47198 * 177.10029 * 1 2 3 20 20 H 1.09000 * 109.47061 * 57.10008 * 1 2 3 21 21 H 1.08998 * 109.47022 * 297.10601 * 1 2 3 22 22 H 1.09004 * 110.75651 * 321.68834 * 4 2 1 23 23 H 1.08998 * 110.76218 * 84.88103 * 4 2 1 24 24 H 1.09006 * 110.48407 * 156.62066 * 5 4 2 25 25 H 1.08994 * 110.48957 * 279.12448 * 5 4 2 26 26 H 1.08998 * 109.47196 * 61.45165 * 7 6 5 27 27 H 1.08999 * 109.46851 * 181.45717 * 7 6 5 28 28 H 1.08997 * 109.46743 * 301.45110 * 7 6 5 29 29 H 1.08999 * 109.46968 * 58.54763 * 8 6 5 30 30 H 1.09001 * 109.47011 * 178.54354 * 8 6 5 31 31 H 1.08997 * 109.47517 * 298.54713 * 8 6 5 32 32 H 0.96700 * 113.99817 * 181.52477 * 10 9 6 33 33 H 0.96995 * 120.00142 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7805 -1.2231 5 6 3.4907 -1.1970 -0.7614 6 6 3.3165 -1.5414 0.7322 7 6 3.1097 -3.0479 0.9021 8 6 4.5465 -1.0884 1.5214 9 6 2.0699 -0.7773 1.2182 10 8 1.0835 -1.6989 1.6873 11 6 2.4449 0.1824 2.3180 12 1 2.7118 1.2010 2.0781 13 6 2.4473 -0.2401 3.6305 14 7 2.2639 -1.5115 3.9124 15 14 2.7113 0.9934 5.0082 16 1 2.8921 2.3495 4.4306 17 1 1.5291 0.9922 5.9069 18 1 3.9220 0.6192 5.7824 19 1 -0.3633 -1.0263 -0.0520 20 1 -0.3633 0.5582 -0.8628 21 1 -0.3633 0.4682 0.9148 22 1 1.4581 -1.6584 -1.4242 23 1 2.1221 -0.1366 -2.1011 24 1 3.8316 -2.0706 -1.3171 25 1 4.1903 -0.3705 -0.8853 26 1 3.9875 -3.5789 0.5340 27 1 2.9619 -3.2776 1.9573 28 1 2.2322 -3.3602 0.3360 29 1 4.6852 -0.0149 1.3933 30 1 4.4028 -1.3126 2.5784 31 1 5.4276 -1.6149 1.1548 32 1 0.2645 -1.2803 1.9856 33 1 2.2660 -1.8087 4.8357 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903292.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:17 Heat of formation + Delta-G solvation = -80.617680 kcal Electronic energy + Delta-G solvation = -14164.263450 eV Core-core repulsion = 11995.699548 eV Total energy + Delta-G solvation = -2168.563903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40138 -35.48641 -34.49588 -33.37678 -29.90223 -28.61747 -27.29579 -24.96449 -24.03598 -20.68632 -19.44536 -18.31208 -16.73621 -16.51075 -15.86496 -15.54942 -14.48742 -14.22886 -14.08597 -13.59458 -13.18235 -13.09072 -12.96129 -12.90513 -12.53065 -12.35206 -12.04995 -12.01590 -11.65929 -11.46850 -11.32003 -11.05926 -10.94247 -10.53293 -10.19386 -9.71772 -7.86167 -6.04038 1.38057 1.44389 1.51059 2.48605 3.29831 3.98386 4.02958 4.18490 4.47560 4.62807 4.70519 4.79558 4.86173 4.89862 5.01733 5.09300 5.10913 5.20435 5.26664 5.32607 5.36719 5.50404 5.53523 5.63782 5.71434 5.82310 5.95604 6.06526 6.14919 6.40941 6.92812 7.52981 7.83821 9.08552 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.016474 C = 0.014533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.201722 B = 1699.226852 C = 1926.222091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 H 0.052 0.948 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.051 4.051 7 C -0.101 4.101 8 C -0.099 4.099 9 C 0.252 3.748 10 O -0.546 6.546 11 C -0.554 4.554 12 H 0.040 0.960 13 C 0.045 3.955 14 N -0.864 5.864 15 Si 0.920 3.080 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.288 1.288 19 H 0.055 0.945 20 H 0.060 0.940 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.031 0.969 32 H 0.345 0.655 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 0.970 -7.145 7.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 H 0.070 0.930 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.052 4.052 7 C -0.158 4.158 8 C -0.156 4.156 9 C 0.212 3.788 10 O -0.348 6.348 11 C -0.592 4.592 12 H 0.058 0.942 13 C -0.158 4.158 14 N -0.501 5.501 15 Si 0.748 3.252 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.215 1.215 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.189 0.811 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.137 0.391 -7.146 7.158 hybrid contribution -0.208 1.153 1.432 1.850 sum -0.071 1.544 -5.714 5.919 Atomic orbital electron populations 1.21558 0.94962 1.01314 1.00729 1.22640 0.96161 0.98647 0.96960 0.92968 1.22442 0.95944 0.99289 0.96903 1.22466 0.97173 1.00428 0.95101 1.21183 0.95481 0.95037 0.93485 1.21338 0.98364 0.95213 1.00906 1.21512 0.95105 0.98906 1.00075 1.19402 0.85264 0.85413 0.88736 1.86452 1.26986 1.36359 1.85043 1.21772 1.47992 0.96888 0.92577 0.94188 1.25396 0.95059 0.95554 0.99825 1.70286 1.47948 1.14103 1.17712 0.86129 0.77305 0.80750 0.81053 1.19947 1.21064 1.21473 0.92646 0.92137 0.93934 0.92112 0.91052 0.91458 0.92146 0.94467 0.94163 0.94228 0.94339 0.94157 0.94995 0.81120 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 8.05 71.98 0.58 -3.87 16 2 C -0.13 -4.93 2.95 -9.72 -0.03 -4.96 16 3 H 0.05 2.15 7.69 -2.39 -0.02 2.13 16 4 C -0.11 -3.68 6.33 31.89 0.20 -3.48 16 5 C -0.11 -4.10 5.90 31.67 0.19 -3.91 16 6 C -0.05 -2.24 0.94 -51.39 -0.05 -2.28 16 7 C -0.10 -4.41 7.41 71.98 0.53 -3.87 16 8 C -0.10 -4.46 7.20 71.98 0.52 -3.94 16 9 C 0.25 11.73 0.91 -10.74 -0.01 11.72 16 10 O -0.55 -26.75 8.37 -148.98 -1.25 -28.00 16 11 C -0.55 -28.80 5.96 25.60 0.15 -28.65 16 12 H 0.04 2.14 7.59 -2.91 -0.02 2.12 16 13 C 0.04 2.37 4.20 84.66 0.36 2.73 16 14 N -0.86 -47.82 11.32 21.45 0.24 -47.57 16 15 Si 0.92 42.77 29.54 68.60 2.03 44.80 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H 0.05 1.90 7.37 -2.39 -0.02 1.89 16 20 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 22 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 2.16 7.84 -2.38 -0.02 2.14 16 25 H 0.06 2.09 7.86 -2.39 -0.02 2.07 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 2.02 7.82 -2.39 -0.02 2.00 16 28 H 0.04 1.68 7.82 -2.39 -0.02 1.66 16 29 H 0.04 1.73 7.42 -2.39 -0.02 1.71 16 30 H 0.04 2.06 6.21 -2.39 -0.01 2.05 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.34 16.37 7.47 -74.06 -0.55 15.82 16 33 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 Total: -1.00 -56.10 252.23 3.98 -52.12 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.52 Total: 19.18 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 2.44 Total: -40.53 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.24 Total: -47.57 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -1.25 Total: -28.00 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -56.10 3.98 -52.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903292.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.499 kcal (2) G-P(sol) polarization free energy of solvation -56.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds