Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.54011 * 2 1 4 4 C 1.54887 * 110.48219 * 237.38921 * 2 1 3 5 5 C 1.54896 * 102.74937 * 203.38003 * 4 2 1 6 6 C 1.54266 * 104.19118 * 37.94113 * 5 4 2 7 7 C 1.53007 * 110.03224 * 217.10628 * 6 5 4 8 8 C 1.52999 * 110.03245 * 95.67771 * 6 5 4 9 9 C 1.53873 * 106.60108 * 336.39081 * 6 5 4 10 10 O 1.42898 * 110.07460 * 240.69221 * 9 6 5 11 11 C 1.50707 * 110.03041 * 119.28845 * 9 6 5 12 12 H 1.08000 * 119.99307 * 276.37812 * 11 9 6 13 13 C 1.37871 * 120.00055 * 96.37677 * 11 9 6 14 14 N 1.31516 * 120.00279 * 339.31619 * 13 11 9 15 15 Si 1.86806 * 119.99960 * 159.31227 * 13 11 9 16 16 H 1.48508 * 109.46913 * 59.99970 * 15 13 11 17 17 H 1.48504 * 109.47119 * 300.00464 * 15 13 11 18 18 H 1.48497 * 109.47214 * 179.97438 * 15 13 11 19 19 H 1.09007 * 109.46748 * 290.93191 * 1 2 3 20 20 H 1.09003 * 109.47094 * 50.92650 * 1 2 3 21 21 H 1.08998 * 109.47225 * 170.93080 * 1 2 3 22 22 H 1.08997 * 110.75960 * 321.68992 * 4 2 1 23 23 H 1.09003 * 110.76049 * 84.87997 * 4 2 1 24 24 H 1.08992 * 110.48638 * 156.62091 * 5 4 2 25 25 H 1.09000 * 110.48427 * 279.13193 * 5 4 2 26 26 H 1.08996 * 109.47160 * 177.16888 * 7 6 5 27 27 H 1.08997 * 109.46792 * 297.17265 * 7 6 5 28 28 H 1.09000 * 109.47143 * 57.16784 * 7 6 5 29 29 H 1.08997 * 109.47436 * 302.83188 * 8 6 5 30 30 H 1.09009 * 109.47118 * 62.83118 * 8 6 5 31 31 H 1.09002 * 109.47107 * 182.82961 * 8 6 5 32 32 H 0.96698 * 114.00045 * 173.38137 * 10 9 6 33 33 H 0.96999 * 119.99828 * 354.07621 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0720 -0.7820 -1.2222 5 6 3.4906 -1.1980 -0.7601 6 6 3.3165 -1.5406 0.7339 7 6 4.5465 -1.0866 1.5226 8 6 3.1096 -3.0468 0.9056 9 6 2.0699 -0.7789 1.2172 10 8 2.4245 0.1296 2.2616 11 6 1.0297 -1.7514 1.7106 12 1 0.3597 -2.2270 1.0097 13 6 0.9336 -2.0340 3.0566 14 7 1.9556 -1.8032 3.8516 15 14 -0.6483 -2.7444 3.7512 16 1 -0.9401 -4.0420 3.0905 17 1 -1.7665 -1.7996 3.5022 18 1 -0.4954 -2.9572 5.2129 19 1 -0.3633 0.3672 0.9599 20 1 -0.3633 0.6478 -0.7978 21 1 -0.3633 -1.0148 -0.1620 22 1 1.4580 -1.6600 -1.4223 23 1 2.1220 -0.1390 -2.1010 24 1 3.8314 -2.0722 -1.3148 25 1 4.1902 -0.3715 -0.8851 26 1 4.3927 -1.2873 2.5828 27 1 5.4235 -1.6315 1.1731 28 1 4.6996 -0.0178 1.3735 29 1 2.2466 -3.3641 0.3203 30 1 3.9974 -3.5771 0.5608 31 1 2.9376 -3.2723 1.9581 32 1 1.7032 0.7109 2.5390 33 1 2.8041 -1.5160 3.4797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260903296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = -69.015237 kcal Electronic energy + Delta-G solvation = -14239.524225 eV Core-core repulsion = 12071.463442 eV Total energy + Delta-G solvation = -2168.060783 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.95513 -34.10597 -32.61444 -31.81201 -28.39733 -26.50145 -25.24909 -23.25099 -22.42781 -19.37725 -17.95223 -16.85228 -15.30729 -14.27916 -13.81604 -13.58846 -13.05552 -12.78717 -12.40459 -12.19895 -11.85828 -11.50533 -11.16504 -10.90142 -10.61696 -10.54875 -10.49415 -10.08733 -10.02474 -9.82510 -9.67124 -9.62790 -9.40852 -8.80871 -8.20568 -7.74050 -6.11950 -3.87512 3.47263 3.49745 3.67520 4.61973 5.35334 5.47500 5.51515 5.64738 5.92688 6.12921 6.19744 6.33617 6.35741 6.39764 6.44009 6.55919 6.66249 6.71359 6.76156 6.83448 6.96208 7.05136 7.07870 7.17875 7.29622 7.45913 7.60292 7.73587 8.27875 8.56219 9.06307 9.23908 9.84816 11.21095 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035609 B = 0.017667 C = 0.015001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.139378 B = 1584.494922 C = 1866.135588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 H 0.052 0.948 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.055 4.055 7 C -0.119 4.119 8 C -0.101 4.101 9 C 0.251 3.749 10 O -0.562 6.562 11 C -0.629 4.629 12 H 0.052 0.948 13 C 0.040 3.960 14 N -0.885 5.885 15 Si 1.042 2.958 16 H -0.292 1.292 17 H -0.290 1.290 18 H -0.286 1.286 19 H 0.052 0.948 20 H 0.020 0.980 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.014 0.986 31 H 0.066 0.934 32 H 0.355 0.645 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 1.594 -6.193 6.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.139 4.139 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.056 4.056 7 C -0.177 4.177 8 C -0.158 4.158 9 C 0.211 3.789 10 O -0.366 6.366 11 C -0.666 4.666 12 H 0.070 0.930 13 C -0.170 4.170 14 N -0.520 5.520 15 Si 0.871 3.129 16 H -0.219 1.219 17 H -0.217 1.217 18 H -0.212 1.212 19 H 0.071 0.929 20 H 0.039 0.961 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.199 0.801 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.102 0.838 -4.827 4.900 hybrid contribution 0.083 0.669 -1.490 1.635 sum 0.185 1.508 -6.317 6.497 Atomic orbital electron populations 1.21588 0.95423 1.00817 0.99386 1.22664 0.95823 0.97948 0.97487 0.92979 1.22371 0.96552 0.99264 0.96673 1.22456 0.96447 0.99403 0.97023 1.21310 0.95830 0.96192 0.92248 1.21598 0.95602 0.99362 1.01124 1.21560 0.97531 0.93753 1.02991 1.19524 0.90448 0.86353 0.82537 1.86367 1.40374 1.52676 1.57185 1.22066 1.19647 1.29777 0.95117 0.92963 1.25363 1.01983 0.95818 0.93851 1.70581 1.03069 1.38513 1.39884 0.83990 0.76355 0.76286 0.76230 1.21856 1.21704 1.21205 0.92894 0.96125 0.92316 0.91954 0.93623 0.93051 0.92983 0.91983 0.95533 0.93766 0.93272 0.96742 0.91486 0.80058 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 8.19 37.16 0.30 -1.95 16 2 C -0.12 -2.47 3.06 -88.97 -0.27 -2.74 16 3 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 4 C -0.11 -2.08 6.33 -24.74 -0.16 -2.24 16 5 C -0.12 -2.21 5.90 -25.07 -0.15 -2.36 16 6 C -0.06 -1.21 0.80 -153.39 -0.12 -1.34 16 7 C -0.12 -2.57 7.37 37.16 0.27 -2.30 16 8 C -0.10 -2.28 7.19 37.16 0.27 -2.01 16 9 C 0.25 5.86 0.77 -90.65 -0.07 5.79 16 10 O -0.56 -13.70 8.57 -35.23 -0.30 -14.00 16 11 C -0.63 -16.05 4.35 -34.44 -0.15 -16.20 16 12 H 0.05 1.37 6.33 -52.49 -0.33 1.04 16 13 C 0.04 1.07 4.52 -17.82 -0.08 0.99 16 14 N -0.88 -25.33 12.58 55.43 0.70 -24.63 16 15 Si 1.04 24.30 29.95 -169.99 -5.09 19.20 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H 0.05 1.08 7.97 -51.93 -0.41 0.66 16 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 21 H 0.06 1.20 6.39 -51.93 -0.33 0.87 16 22 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16 25 H 0.05 0.95 7.84 -51.93 -0.41 0.54 16 26 H 0.06 1.48 6.00 -51.93 -0.31 1.17 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.93 7.85 -51.93 -0.41 0.52 16 29 H 0.05 1.11 7.49 -51.93 -0.39 0.72 16 30 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 31 H 0.07 1.70 6.43 -51.93 -0.33 1.36 16 32 H 0.35 8.18 9.06 45.56 0.41 8.60 16 33 H 0.29 8.40 4.26 -40.82 -0.17 8.23 16 LS Contribution 246.93 15.07 3.72 3.72 Total: -1.00 -27.54 246.93 -5.54 -33.08 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.41 Total: 7.00 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -0.16 Total: -24.37 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.70 Total: -24.63 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.30 Total: -14.00 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.09 Total: 19.20 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.54 -5.54 -33.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.936 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds