Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.54011 * 2 1 4 4 C 1.54887 * 110.48219 * 237.38921 * 2 1 3 5 5 C 1.54896 * 102.74937 * 203.38003 * 4 2 1 6 6 C 1.54266 * 104.19118 * 37.94113 * 5 4 2 7 7 C 1.53007 * 110.03224 * 217.10628 * 6 5 4 8 8 C 1.52999 * 110.03245 * 95.67771 * 6 5 4 9 9 C 1.53873 * 106.60108 * 336.39081 * 6 5 4 10 10 O 1.42898 * 110.07460 * 240.69221 * 9 6 5 11 11 C 1.50707 * 110.03041 * 119.28845 * 9 6 5 12 12 H 1.08000 * 119.99307 * 276.37812 * 11 9 6 13 13 C 1.37871 * 120.00055 * 96.37677 * 11 9 6 14 14 N 1.31516 * 120.00279 * 339.31619 * 13 11 9 15 15 Si 1.86806 * 119.99960 * 159.31227 * 13 11 9 16 16 H 1.48508 * 109.46913 * 59.99970 * 15 13 11 17 17 H 1.48504 * 109.47119 * 300.00464 * 15 13 11 18 18 H 1.48497 * 109.47214 * 179.97438 * 15 13 11 19 19 H 1.09007 * 109.46748 * 290.93191 * 1 2 3 20 20 H 1.09003 * 109.47094 * 50.92650 * 1 2 3 21 21 H 1.08998 * 109.47225 * 170.93080 * 1 2 3 22 22 H 1.08997 * 110.75960 * 321.68992 * 4 2 1 23 23 H 1.09003 * 110.76049 * 84.87997 * 4 2 1 24 24 H 1.08992 * 110.48638 * 156.62091 * 5 4 2 25 25 H 1.09000 * 110.48427 * 279.13193 * 5 4 2 26 26 H 1.08996 * 109.47160 * 177.16888 * 7 6 5 27 27 H 1.08997 * 109.46792 * 297.17265 * 7 6 5 28 28 H 1.09000 * 109.47143 * 57.16784 * 7 6 5 29 29 H 1.08997 * 109.47436 * 302.83188 * 8 6 5 30 30 H 1.09009 * 109.47118 * 62.83118 * 8 6 5 31 31 H 1.09002 * 109.47107 * 182.82961 * 8 6 5 32 32 H 0.96698 * 114.00045 * 173.38137 * 10 9 6 33 33 H 0.96999 * 119.99828 * 354.07621 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0206 0.0000 4 6 2.0720 -0.7820 -1.2222 5 6 3.4906 -1.1980 -0.7601 6 6 3.3165 -1.5406 0.7339 7 6 4.5465 -1.0866 1.5226 8 6 3.1096 -3.0468 0.9056 9 6 2.0699 -0.7789 1.2172 10 8 2.4245 0.1296 2.2616 11 6 1.0297 -1.7514 1.7106 12 1 0.3597 -2.2270 1.0097 13 6 0.9336 -2.0340 3.0566 14 7 1.9556 -1.8032 3.8516 15 14 -0.6483 -2.7444 3.7512 16 1 -0.9401 -4.0420 3.0905 17 1 -1.7665 -1.7996 3.5022 18 1 -0.4954 -2.9572 5.2129 19 1 -0.3633 0.3672 0.9599 20 1 -0.3633 0.6478 -0.7978 21 1 -0.3633 -1.0148 -0.1620 22 1 1.4580 -1.6600 -1.4223 23 1 2.1220 -0.1390 -2.1010 24 1 3.8314 -2.0722 -1.3148 25 1 4.1902 -0.3715 -0.8851 26 1 4.3927 -1.2873 2.5828 27 1 5.4235 -1.6315 1.1731 28 1 4.6996 -0.0178 1.3735 29 1 2.2466 -3.3641 0.3203 30 1 3.9974 -3.5771 0.5608 31 1 2.9376 -3.2723 1.9581 32 1 1.7032 0.7109 2.5390 33 1 2.8041 -1.5160 3.4797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903296.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = -85.600746 kcal Electronic energy + Delta-G solvation = -14240.243427 eV Core-core repulsion = 12071.463442 eV Total energy + Delta-G solvation = -2168.779985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.68175 -35.91938 -34.35209 -33.74543 -30.04072 -28.30504 -27.07993 -25.06508 -24.06610 -21.08070 -19.75468 -18.71354 -17.10826 -16.07537 -15.54512 -15.39196 -14.74507 -14.50997 -14.15636 -13.93674 -13.58421 -13.21046 -12.91797 -12.63918 -12.41999 -12.26233 -12.22601 -11.91861 -11.83920 -11.60279 -11.32233 -11.23497 -11.09291 -10.61256 -10.15410 -9.67656 -8.20206 -5.94460 1.57951 1.61758 1.80579 2.69315 3.36828 3.79914 3.87652 4.05549 4.30309 4.48522 4.56853 4.63928 4.78289 4.83458 4.92332 4.96055 4.98681 5.10389 5.12040 5.18739 5.24848 5.34344 5.48234 5.51023 5.64665 5.73238 5.79557 5.94431 6.30589 6.53746 6.99894 7.34446 7.83846 9.12378 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035609 B = 0.017667 C = 0.015001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.139378 B = 1584.494922 C = 1866.135588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 H 0.057 0.943 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.064 4.064 7 C -0.111 4.111 8 C -0.094 4.094 9 C 0.235 3.765 10 O -0.573 6.573 11 C -0.616 4.616 12 H 0.043 0.957 13 C -0.003 4.003 14 N -0.920 5.920 15 Si 1.081 2.919 16 H -0.283 1.283 17 H -0.277 1.277 18 H -0.297 1.297 19 H 0.036 0.964 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.355 0.645 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 1.890 -8.101 8.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.065 4.065 7 C -0.168 4.168 8 C -0.151 4.151 9 C 0.196 3.804 10 O -0.377 6.377 11 C -0.654 4.654 12 H 0.061 0.939 13 C -0.208 4.208 14 N -0.557 5.557 15 Si 0.907 3.093 16 H -0.209 1.209 17 H -0.203 1.203 18 H -0.223 1.223 19 H 0.056 0.944 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.199 0.801 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.003 1.135 -6.757 6.852 hybrid contribution 0.125 0.577 -0.927 1.098 sum 0.127 1.712 -7.684 7.873 Atomic orbital electron populations 1.21500 0.94900 1.00593 0.99659 1.22611 0.96305 0.98020 0.96993 0.92472 1.22353 0.95904 0.99265 0.96778 1.22415 0.97108 1.00670 0.94518 1.21352 0.95194 0.95352 0.94579 1.21491 0.96490 0.99741 0.99119 1.21450 0.98325 0.94825 1.00506 1.19768 0.90934 0.86386 0.83346 1.86376 1.40507 1.52811 1.57995 1.22233 1.19376 1.29182 0.94643 0.93895 1.26309 1.03457 0.96111 0.94910 1.70658 1.03425 1.41295 1.40339 0.83437 0.74314 0.76427 0.75076 1.20867 1.20277 1.22320 0.94437 0.93177 0.93591 0.92513 0.90626 0.91317 0.91650 0.95221 0.93255 0.93620 0.93943 0.94364 0.95070 0.80058 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 8.19 71.98 0.59 -3.48 16 2 C -0.12 -4.68 3.06 -9.72 -0.03 -4.71 16 3 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 4 C -0.11 -3.59 6.33 31.89 0.20 -3.38 16 5 C -0.11 -3.81 5.90 31.67 0.19 -3.62 16 6 C -0.06 -2.72 0.80 -51.46 -0.04 -2.76 16 7 C -0.11 -4.67 7.37 71.98 0.53 -4.14 16 8 C -0.09 -4.14 7.19 71.98 0.52 -3.62 16 9 C 0.24 10.79 0.77 -10.82 -0.01 10.78 16 10 O -0.57 -28.08 8.57 -148.98 -1.28 -29.36 16 11 C -0.62 -31.42 4.35 25.60 0.11 -31.31 16 12 H 0.04 2.24 6.33 -2.91 -0.02 2.22 16 13 C 0.00 -0.18 4.52 84.65 0.38 0.20 16 14 N -0.92 -53.83 12.58 21.45 0.27 -53.56 16 15 Si 1.08 49.45 29.95 68.60 2.05 51.50 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 19 H 0.04 1.48 7.97 -2.38 -0.02 1.46 16 20 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.05 1.80 6.39 -2.39 -0.02 1.79 16 22 H 0.06 1.99 7.94 -2.39 -0.02 1.97 16 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.07 2.16 7.84 -2.39 -0.02 2.14 16 25 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 26 H 0.03 1.42 6.00 -2.39 -0.01 1.40 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.86 7.85 -2.39 -0.02 1.84 16 29 H 0.04 1.87 7.49 -2.39 -0.02 1.85 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.03 1.57 6.43 -2.39 -0.02 1.56 16 32 H 0.35 16.63 9.06 -74.06 -0.67 15.95 16 33 H 0.29 16.82 4.26 -92.71 -0.40 16.43 16 Total: -1.00 -58.24 246.93 4.27 -53.97 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.78 Total: 23.50 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 2.44 Total: -46.05 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.27 Total: -53.56 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -1.28 Total: -29.36 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.50 kcal Total: -58.24 4.27 -53.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903296.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.635 kcal (2) G-P(sol) polarization free energy of solvation -58.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds