Wall clock time and date at job start Mon Mar 30 2020 02:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.54165 * 2 1 4 4 C 1.54894 * 110.48680 * 122.61180 * 2 1 3 5 5 C 1.54895 * 102.74760 * 156.62266 * 4 2 1 6 6 C 1.54362 * 104.21451 * 322.07157 * 5 4 2 7 7 C 1.53006 * 110.04979 * 264.31501 * 6 5 4 8 8 C 1.53004 * 110.06875 * 142.85079 * 6 5 4 9 9 C 1.53878 * 106.55023 * 23.57929 * 6 5 4 10 10 O 1.42900 * 110.03281 * 119.34510 * 9 6 5 11 11 C 1.50703 * 110.03005 * 240.72976 * 9 6 5 12 12 H 1.07997 * 120.00209 * 93.28755 * 11 9 6 13 13 C 1.37877 * 119.99961 * 273.27924 * 11 9 6 14 14 N 1.31517 * 119.99690 * 11.19521 * 13 11 9 15 15 Si 1.86793 * 120.00241 * 191.19130 * 13 11 9 16 16 H 1.48510 * 109.47200 * 60.00029 * 15 13 11 17 17 H 1.48501 * 109.47062 * 300.00450 * 15 13 11 18 18 H 1.48491 * 109.47396 * 180.02562 * 15 13 11 19 19 H 1.09007 * 109.47447 * 189.69338 * 1 2 3 20 20 H 1.08995 * 109.47485 * 309.68919 * 1 2 3 21 21 H 1.08997 * 109.47503 * 69.69171 * 1 2 3 22 22 H 1.09001 * 110.75328 * 274.93047 * 4 2 1 23 23 H 1.08989 * 110.75688 * 38.30403 * 4 2 1 24 24 H 1.08994 * 110.48520 * 80.73756 * 5 4 2 25 25 H 1.09001 * 110.48073 * 203.24309 * 5 4 2 26 26 H 1.09000 * 109.47230 * 177.11438 * 7 6 5 27 27 H 1.08998 * 109.46658 * 297.11202 * 7 6 5 28 28 H 1.09002 * 109.46824 * 57.11053 * 7 6 5 29 29 H 1.08994 * 109.47043 * 302.87318 * 8 6 5 30 30 H 1.08996 * 109.46871 * 62.87770 * 8 6 5 31 31 H 1.09007 * 109.47350 * 182.87248 * 8 6 5 32 32 H 0.96704 * 113.99287 * 176.40211 * 10 9 6 33 33 H 0.96997 * 120.00248 * 5.71468 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1979 0.7600 6 6 3.3170 -1.5405 -0.7351 7 6 3.1106 -3.0467 -0.9076 8 6 4.5464 -1.0856 -1.5242 9 6 2.0699 -0.7789 -1.2172 10 8 2.4245 0.1296 -2.2617 11 6 1.0298 -1.7515 -1.7105 12 1 0.2623 -2.1078 -1.0394 13 6 1.0579 -2.1863 -3.0186 14 7 2.1049 -1.9333 -3.7733 15 14 -0.3910 -3.1347 -3.7190 16 1 -1.6139 -2.2952 -3.6462 17 1 -0.5961 -4.3773 -2.9322 18 1 -0.1148 -3.4859 -5.1351 19 1 -0.3634 -1.0130 0.1730 20 1 -0.3634 0.6562 0.7908 21 1 -0.3634 0.3567 -0.9637 22 1 2.1252 -0.1381 2.1001 23 1 1.4581 -1.6600 1.4223 24 1 4.1897 -0.3707 0.8828 25 1 3.8325 -2.0707 1.3164 26 1 2.9380 -3.2716 -1.9601 27 1 3.9987 -3.5768 -0.5636 28 1 2.2480 -3.3646 -0.3219 29 1 4.6992 -0.0168 -1.3746 30 1 5.4238 -1.6304 -1.1757 31 1 4.3921 -1.2857 -2.5846 32 1 1.6721 0.6002 -2.6459 33 1 2.8905 -1.5146 -3.3882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260903297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:21 Heat of formation + Delta-G solvation = -67.779770 kcal Electronic energy + Delta-G solvation = -14264.146637 eV Core-core repulsion = 12096.139428 eV Total energy + Delta-G solvation = -2168.007209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.98266 -34.09533 -32.70636 -31.78424 -28.36305 -26.48077 -25.24529 -23.29934 -22.40814 -19.35807 -17.97941 -16.86915 -15.29561 -14.27872 -13.82559 -13.60944 -13.11662 -12.76592 -12.43035 -12.15188 -11.84571 -11.41637 -11.20113 -10.90195 -10.62348 -10.54531 -10.48481 -10.10148 -10.01573 -9.88480 -9.68059 -9.61227 -9.39015 -8.68757 -8.16823 -7.81971 -6.10191 -3.94298 3.46165 3.47460 3.65845 4.59234 5.38370 5.48996 5.50526 5.65700 5.93059 6.14345 6.19867 6.35730 6.36933 6.40228 6.43316 6.57101 6.67969 6.71848 6.77121 6.84600 6.96922 7.06412 7.09594 7.17243 7.28831 7.47977 7.64532 7.77421 8.21375 8.51966 9.04628 9.26949 9.81910 11.22805 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035221 B = 0.017815 C = 0.015208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.784255 B = 1571.303754 C = 1840.705887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 H 0.053 0.947 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.052 4.052 7 C -0.107 4.107 8 C -0.122 4.122 9 C 0.248 3.752 10 O -0.567 6.567 11 C -0.625 4.625 12 H 0.054 0.946 13 C 0.036 3.964 14 N -0.898 5.898 15 Si 1.048 2.952 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.285 1.285 19 H 0.058 0.942 20 H 0.021 0.979 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.026 0.974 31 H 0.064 0.936 32 H 0.357 0.643 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.096 1.465 5.954 6.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.136 4.136 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.153 4.153 6 C -0.053 4.053 7 C -0.164 4.164 8 C -0.179 4.179 9 C 0.209 3.791 10 O -0.371 6.371 11 C -0.663 4.663 12 H 0.073 0.927 13 C -0.173 4.173 14 N -0.537 5.537 15 Si 0.878 3.122 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.211 1.211 19 H 0.077 0.923 20 H 0.040 0.960 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.202 0.798 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.049 0.570 4.694 4.729 hybrid contribution -0.061 0.824 1.403 1.629 sum -0.111 1.394 6.097 6.256 Atomic orbital electron populations 1.21629 0.95567 1.00706 0.99527 1.22593 0.95656 0.98067 0.97326 0.92882 1.22374 0.96588 0.99247 0.96662 1.22472 0.96440 0.99407 0.97002 1.21258 0.95602 0.96190 0.92248 1.21643 0.97512 0.93677 1.03567 1.21652 0.95620 0.99315 1.01340 1.19532 0.90667 0.86211 0.82733 1.86339 1.36872 1.59284 1.54627 1.22250 1.14686 1.30176 0.99183 0.92738 1.25432 1.01147 0.96724 0.94007 1.70602 1.05024 1.37938 1.40088 0.83877 0.75690 0.76309 0.76324 1.21709 1.21772 1.21099 0.92334 0.96036 0.92862 0.93613 0.91901 0.93003 0.93013 0.90926 0.96822 0.93257 0.93800 0.95538 0.91667 0.79781 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.17 37.15 0.30 -1.99 16 2 C -0.12 -2.43 3.10 -88.96 -0.28 -2.71 16 3 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 4 C -0.11 -2.10 6.33 -24.73 -0.16 -2.26 16 5 C -0.12 -2.24 5.90 -25.02 -0.15 -2.38 16 6 C -0.05 -1.16 0.71 -153.33 -0.11 -1.27 16 7 C -0.11 -2.44 7.20 37.16 0.27 -2.18 16 8 C -0.12 -2.67 7.36 37.16 0.27 -2.39 16 9 C 0.25 5.82 0.77 -90.65 -0.07 5.75 16 10 O -0.57 -13.89 8.80 -35.23 -0.31 -14.20 16 11 C -0.63 -15.94 4.84 -34.44 -0.17 -16.11 16 12 H 0.05 1.41 5.87 -52.49 -0.31 1.11 16 13 C 0.04 0.95 4.18 -17.82 -0.07 0.88 16 14 N -0.90 -25.61 12.38 55.43 0.69 -24.92 16 15 Si 1.05 24.28 29.92 -169.99 -5.09 19.19 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H 0.06 1.19 6.26 -51.93 -0.32 0.87 16 20 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.05 1.08 7.94 -51.93 -0.41 0.67 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.21 7.93 -51.94 -0.41 0.80 16 24 H 0.05 0.95 7.84 -51.93 -0.41 0.55 16 25 H 0.05 0.93 7.85 -51.93 -0.41 0.52 16 26 H 0.07 1.87 5.64 -51.93 -0.29 1.57 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 1.13 7.51 -51.93 -0.39 0.74 16 29 H 0.04 0.93 7.84 -51.93 -0.41 0.53 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.58 5.74 -51.93 -0.30 1.28 16 32 H 0.36 8.37 9.03 45.56 0.41 8.79 16 33 H 0.30 8.39 3.50 -40.82 -0.14 8.25 16 LS Contribution 244.56 15.07 3.69 3.69 Total: -1.00 -27.51 244.56 -5.48 -32.99 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.30 Total: 7.92 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -0.16 Total: -24.66 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.69 Total: -24.92 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.31 Total: -14.20 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.09 Total: 19.19 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.51 -5.48 -32.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.794 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds