Wall clock time and date at job start Mon Mar 30 2020 02:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.54165 * 2 1 4 4 C 1.54894 * 110.48680 * 122.61180 * 2 1 3 5 5 C 1.54895 * 102.74760 * 156.62266 * 4 2 1 6 6 C 1.54362 * 104.21451 * 322.07157 * 5 4 2 7 7 C 1.53006 * 110.04979 * 264.31501 * 6 5 4 8 8 C 1.53004 * 110.06875 * 142.85079 * 6 5 4 9 9 C 1.53878 * 106.55023 * 23.57929 * 6 5 4 10 10 O 1.42900 * 110.03281 * 119.34510 * 9 6 5 11 11 C 1.50703 * 110.03005 * 240.72976 * 9 6 5 12 12 H 1.07997 * 120.00209 * 93.28755 * 11 9 6 13 13 C 1.37877 * 119.99961 * 273.27924 * 11 9 6 14 14 N 1.31517 * 119.99690 * 11.19521 * 13 11 9 15 15 Si 1.86793 * 120.00241 * 191.19130 * 13 11 9 16 16 H 1.48510 * 109.47200 * 60.00029 * 15 13 11 17 17 H 1.48501 * 109.47062 * 300.00450 * 15 13 11 18 18 H 1.48491 * 109.47396 * 180.02562 * 15 13 11 19 19 H 1.09007 * 109.47447 * 189.69338 * 1 2 3 20 20 H 1.08995 * 109.47485 * 309.68919 * 1 2 3 21 21 H 1.08997 * 109.47503 * 69.69171 * 1 2 3 22 22 H 1.09001 * 110.75328 * 274.93047 * 4 2 1 23 23 H 1.08989 * 110.75688 * 38.30403 * 4 2 1 24 24 H 1.08994 * 110.48520 * 80.73756 * 5 4 2 25 25 H 1.09001 * 110.48073 * 203.24309 * 5 4 2 26 26 H 1.09000 * 109.47230 * 177.11438 * 7 6 5 27 27 H 1.08998 * 109.46658 * 297.11202 * 7 6 5 28 28 H 1.09002 * 109.46824 * 57.11053 * 7 6 5 29 29 H 1.08994 * 109.47043 * 302.87318 * 8 6 5 30 30 H 1.08996 * 109.46871 * 62.87770 * 8 6 5 31 31 H 1.09007 * 109.47350 * 182.87248 * 8 6 5 32 32 H 0.96704 * 113.99287 * 176.40211 * 10 9 6 33 33 H 0.96997 * 120.00248 * 5.71468 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2222 5 6 3.4907 -1.1979 0.7600 6 6 3.3170 -1.5405 -0.7351 7 6 3.1106 -3.0467 -0.9076 8 6 4.5464 -1.0856 -1.5242 9 6 2.0699 -0.7789 -1.2172 10 8 2.4245 0.1296 -2.2617 11 6 1.0298 -1.7515 -1.7105 12 1 0.2623 -2.1078 -1.0394 13 6 1.0579 -2.1863 -3.0186 14 7 2.1049 -1.9333 -3.7733 15 14 -0.3910 -3.1347 -3.7190 16 1 -1.6139 -2.2952 -3.6462 17 1 -0.5961 -4.3773 -2.9322 18 1 -0.1148 -3.4859 -5.1351 19 1 -0.3634 -1.0130 0.1730 20 1 -0.3634 0.6562 0.7908 21 1 -0.3634 0.3567 -0.9637 22 1 2.1252 -0.1381 2.1001 23 1 1.4581 -1.6600 1.4223 24 1 4.1897 -0.3707 0.8828 25 1 3.8325 -2.0707 1.3164 26 1 2.9380 -3.2716 -1.9601 27 1 3.9987 -3.5768 -0.5636 28 1 2.2480 -3.3646 -0.3219 29 1 4.6992 -0.0168 -1.3746 30 1 5.4238 -1.6304 -1.1757 31 1 4.3921 -1.2857 -2.5846 32 1 1.6721 0.6002 -2.6459 33 1 2.8905 -1.5146 -3.3882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260903297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:20 Heat of formation + Delta-G solvation = -84.331949 kcal Electronic energy + Delta-G solvation = -14264.864394 eV Core-core repulsion = 12096.139428 eV Total energy + Delta-G solvation = -2168.724965 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72120 -35.91350 -34.46725 -33.69531 -30.01309 -28.30404 -27.07875 -25.11015 -24.05884 -21.06964 -19.78576 -18.72911 -17.09998 -16.09067 -15.56685 -15.41315 -14.81226 -14.47059 -14.18945 -13.89169 -13.57935 -13.14670 -12.96432 -12.64058 -12.39843 -12.27781 -12.22529 -11.92419 -11.81942 -11.66768 -11.33284 -11.23351 -11.09532 -10.49835 -10.14313 -9.72403 -8.17206 -6.00846 1.57973 1.61993 1.80549 2.68394 3.40344 3.79413 3.87243 4.05423 4.29588 4.48641 4.56163 4.64307 4.78460 4.82548 4.91662 4.96142 4.98197 5.09929 5.11927 5.19220 5.24952 5.33838 5.47686 5.49783 5.63290 5.73317 5.82210 5.96519 6.25094 6.51211 6.99569 7.35994 7.81624 9.15966 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035221 B = 0.017815 C = 0.015208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.784255 B = 1571.303754 C = 1840.705887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 H 0.055 0.945 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.062 4.062 7 C -0.100 4.100 8 C -0.114 4.114 9 C 0.232 3.768 10 O -0.577 6.577 11 C -0.615 4.615 12 H 0.048 0.952 13 C -0.006 4.006 14 N -0.933 5.933 15 Si 1.086 2.914 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.296 1.296 19 H 0.046 0.954 20 H 0.050 0.950 21 H 0.037 0.963 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.033 0.967 32 H 0.356 0.644 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 1.670 7.801 7.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.137 4.137 3 H 0.074 0.926 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.062 4.062 7 C -0.157 4.157 8 C -0.171 4.171 9 C 0.193 3.807 10 O -0.381 6.381 11 C -0.654 4.654 12 H 0.066 0.934 13 C -0.209 4.209 14 N -0.573 5.573 15 Si 0.912 3.088 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.222 1.222 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.056 0.944 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.201 0.799 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.203 0.778 6.563 6.612 hybrid contribution -0.004 0.770 0.851 1.147 sum -0.206 1.548 7.414 7.577 Atomic orbital electron populations 1.21538 0.94906 1.00599 0.99790 1.22553 0.96258 0.98018 0.96891 0.92615 1.22356 0.95890 0.99279 0.96763 1.22434 0.97149 1.00635 0.94533 1.21313 0.95003 0.95364 0.94558 1.21536 0.98242 0.94745 1.01227 1.21544 0.96524 0.99649 0.99395 1.19788 0.91141 0.86271 0.83504 1.86343 1.36988 1.59432 1.55353 1.22437 1.14518 1.29613 0.98783 0.93377 1.26366 1.02237 0.97289 0.95020 1.70667 1.05727 1.40154 1.40739 0.83351 0.74156 0.76007 0.75250 1.20324 1.20690 1.22242 0.93457 0.93130 0.94350 0.90625 0.92373 0.91753 0.91297 0.94302 0.94633 0.93870 0.93701 0.93355 0.94831 0.79915 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.17 71.98 0.59 -3.55 16 2 C -0.12 -4.64 3.10 -9.72 -0.03 -4.67 16 3 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 4 C -0.11 -3.62 6.33 31.89 0.20 -3.41 16 5 C -0.11 -3.88 5.90 31.70 0.19 -3.69 16 6 C -0.06 -2.66 0.71 -51.42 -0.04 -2.69 16 7 C -0.10 -4.49 7.20 71.98 0.52 -3.97 16 8 C -0.11 -4.86 7.36 71.98 0.53 -4.33 16 9 C 0.23 10.72 0.77 -10.81 -0.01 10.71 16 10 O -0.58 -28.42 8.80 -148.98 -1.31 -29.73 16 11 C -0.62 -31.24 4.84 25.60 0.12 -31.12 16 12 H 0.05 2.47 5.87 -2.91 -0.02 2.45 16 13 C -0.01 -0.30 4.18 84.65 0.35 0.05 16 14 N -0.93 -54.24 12.38 21.45 0.27 -53.98 16 15 Si 1.09 49.26 29.92 68.60 2.05 51.31 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 19 H 0.05 1.84 6.26 -2.38 -0.01 1.83 16 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.04 1.50 7.94 -2.39 -0.02 1.48 16 22 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 24 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 25 H 0.07 2.20 7.85 -2.39 -0.02 2.18 16 26 H 0.04 1.99 5.64 -2.39 -0.01 1.98 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.92 7.51 -2.39 -0.02 1.91 16 29 H 0.04 1.86 7.84 -2.39 -0.02 1.84 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.03 1.63 5.74 -2.38 -0.01 1.62 16 32 H 0.36 17.00 9.03 -74.05 -0.67 16.33 16 33 H 0.29 16.86 3.50 -92.71 -0.32 16.54 16 Total: -1.00 -57.90 244.56 4.29 -53.60 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.86 Total: 25.47 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 2.43 Total: -46.68 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.27 Total: -53.98 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.31 Total: -29.73 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Total: -57.90 4.29 -53.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.729 kcal (2) G-P(sol) polarization free energy of solvation -57.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds