Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.43067 * 2 1 4 4 C 1.54887 * 110.48925 * 122.54891 * 2 1 3 5 5 C 1.54886 * 102.74796 * 156.75274 * 4 2 1 6 6 C 1.54266 * 104.20050 * 322.05866 * 5 4 2 7 7 C 1.52988 * 110.03629 * 142.89448 * 6 5 4 8 8 C 1.53002 * 110.02985 * 264.27839 * 6 5 4 9 9 C 1.53875 * 106.63564 * 23.58146 * 6 5 4 10 10 O 1.42904 * 110.03251 * 240.73968 * 9 6 5 11 11 C 1.50703 * 110.02757 * 119.31428 * 9 6 5 12 12 H 1.08000 * 119.99880 * 267.12548 * 11 9 6 13 13 C 1.37876 * 120.00326 * 87.13181 * 11 9 6 14 14 N 1.31520 * 119.99634 * 353.01374 * 13 11 9 15 15 Si 1.86802 * 120.00252 * 173.01426 * 13 11 9 16 16 H 1.48493 * 109.47206 * 59.99723 * 15 13 11 17 17 H 1.48496 * 109.47099 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46804 * 299.99688 * 15 13 11 19 19 H 1.08994 * 109.47238 * 304.21341 * 1 2 3 20 20 H 1.09002 * 109.47439 * 64.22265 * 1 2 3 21 21 H 1.09004 * 109.47029 * 184.21907 * 1 2 3 22 22 H 1.08997 * 110.75099 * 38.43779 * 4 2 1 23 23 H 1.08997 * 110.91061 * 275.14244 * 4 2 1 24 24 H 1.08999 * 110.48894 * 203.37500 * 5 4 2 25 25 H 1.09006 * 110.48400 * 80.73701 * 5 4 2 26 26 H 1.09001 * 109.47485 * 182.09611 * 7 6 5 27 27 H 1.08998 * 109.47197 * 62.09409 * 7 6 5 28 28 H 1.09003 * 109.47238 * 302.09161 * 7 6 5 29 29 H 1.09002 * 109.47107 * 297.90781 * 8 6 5 30 30 H 1.09002 * 109.46849 * 57.90355 * 8 6 5 31 31 H 1.09002 * 109.46903 * 177.90575 * 8 6 5 32 32 H 0.96703 * 113.99473 * 180.02562 * 10 9 6 33 33 H 0.96996 * 119.99838 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0722 -0.7806 1.2230 5 6 3.4920 -1.1941 0.7625 6 6 3.3203 -1.5374 -0.7316 7 6 4.5502 -1.0814 -1.5189 8 6 3.1177 -3.0442 -0.9031 9 6 2.0725 -0.7792 -1.2173 10 8 1.0890 -1.7041 -1.6856 11 6 2.4469 0.1788 -2.3188 12 1 2.6950 1.2030 -2.0825 13 6 2.4727 -0.2522 -3.6282 14 7 2.3059 -1.5273 -3.9041 15 14 2.7444 0.9747 -5.0103 16 1 4.0572 1.6440 -4.8271 17 1 2.7283 0.2635 -6.3138 18 1 1.6627 1.9921 -4.9887 19 1 -0.3633 0.5778 0.8498 20 1 -0.3634 0.4469 -0.9254 21 1 -0.3633 -1.0249 0.0756 22 1 1.4595 -1.6597 1.4226 23 1 2.1228 -0.1390 2.1027 24 1 3.8340 -2.0675 1.3178 25 1 4.1894 -0.3654 0.8858 26 1 4.4035 -1.2946 -2.5778 27 1 5.4301 -1.6150 -1.1595 28 1 4.6934 -0.0097 -1.3806 29 1 4.0012 -3.5727 -0.5451 30 1 2.2471 -3.3614 -0.3290 31 1 2.9603 -3.2719 -1.9574 32 1 0.2777 -1.2868 -2.0060 33 1 2.3244 -1.8306 -4.8252 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260903298.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -65.034623 kcal Electronic energy + Delta-G solvation = -14167.482617 eV Core-core repulsion = 11999.594446 eV Total energy + Delta-G solvation = -2167.888171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.68082 -33.65521 -32.69014 -31.53456 -28.23215 -26.80200 -25.45871 -23.12391 -22.42613 -19.05246 -17.59009 -16.42302 -15.00214 -14.54650 -14.11126 -13.76163 -12.86082 -12.50190 -12.33370 -11.92131 -11.46878 -11.29318 -11.20873 -11.06521 -10.69460 -10.57261 -10.29277 -10.18755 -9.90524 -9.83121 -9.63182 -9.38111 -9.21558 -8.60500 -8.25507 -7.85098 -5.84632 -3.98812 3.32036 3.37869 3.40960 4.45938 5.30983 5.60090 5.65351 5.75867 6.12974 6.17835 6.29888 6.42506 6.47168 6.50641 6.58853 6.66111 6.75433 6.85010 6.91506 6.96300 7.02551 7.13233 7.31032 7.38485 7.40926 7.78894 7.84313 7.92187 8.02267 8.36455 8.92728 9.52396 9.75967 11.12106 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037349 B = 0.016496 C = 0.014545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.496802 B = 1696.962489 C = 1924.560481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 H 0.062 0.938 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.040 4.040 7 C -0.105 4.105 8 C -0.112 4.112 9 C 0.266 3.734 10 O -0.537 6.537 11 C -0.551 4.551 12 H 0.052 0.948 13 C 0.080 3.920 14 N -0.844 5.844 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.279 1.279 19 H 0.034 0.966 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.009 0.991 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.346 0.654 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 0.676 5.529 5.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.041 4.041 7 C -0.163 4.163 8 C -0.170 4.170 9 C 0.225 3.775 10 O -0.340 6.340 11 C -0.589 4.589 12 H 0.070 0.930 13 C -0.125 4.125 14 N -0.479 5.479 15 Si 0.700 3.300 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.205 1.205 19 H 0.053 0.947 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.190 0.810 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.027 0.077 5.537 5.538 hybrid contribution -0.191 1.256 -0.950 1.586 sum -0.164 1.332 4.588 4.780 Atomic orbital electron populations 1.21628 0.96564 1.00897 1.00106 1.22722 0.94675 0.99463 0.97294 0.91915 1.22482 0.96818 0.99082 0.97022 1.22521 0.96285 0.99334 0.97525 1.21060 0.96404 0.95318 0.91286 1.21627 0.93660 0.98916 1.02048 1.21496 0.97348 0.94808 1.03304 1.19176 0.84787 0.85312 0.88197 1.86445 1.27824 1.35789 1.83939 1.21496 1.49110 0.96585 0.91718 0.92977 1.24928 0.94860 0.94525 0.98189 1.70149 1.46692 1.12738 1.18283 0.87005 0.78754 0.82054 0.82190 1.20401 1.21448 1.20466 0.94735 0.92876 0.92698 0.92421 0.93768 0.93369 0.92785 0.90741 0.97187 0.93803 0.96601 0.94353 0.90512 0.81009 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.07 37.16 0.30 -2.17 16 2 C -0.12 -2.54 2.95 -88.90 -0.26 -2.80 16 3 H 0.06 1.34 7.69 -51.93 -0.40 0.94 16 4 C -0.12 -2.18 6.33 -24.74 -0.16 -2.34 16 5 C -0.12 -2.33 5.90 -25.07 -0.15 -2.48 16 6 C -0.04 -0.90 0.94 -153.40 -0.14 -1.05 16 7 C -0.11 -2.43 7.20 37.15 0.27 -2.16 16 8 C -0.11 -2.53 7.40 37.16 0.27 -2.25 16 9 C 0.27 6.27 0.88 -90.59 -0.08 6.19 16 10 O -0.54 -13.18 8.39 -35.23 -0.30 -13.48 16 11 C -0.55 -14.28 6.00 -34.44 -0.21 -14.49 16 12 H 0.05 1.38 7.58 -52.49 -0.40 0.98 16 13 C 0.08 2.11 4.14 -17.82 -0.07 2.04 16 14 N -0.84 -22.94 11.15 55.43 0.62 -22.32 16 15 Si 0.87 20.61 29.54 -169.99 -5.02 15.59 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 20 H 0.05 0.99 7.79 -51.93 -0.40 0.59 16 21 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 22 H 0.06 1.07 8.02 -51.93 -0.42 0.66 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.87 7.84 -51.93 -0.41 0.47 16 25 H 0.05 1.02 7.84 -51.93 -0.41 0.62 16 26 H 0.07 1.91 6.04 -51.93 -0.31 1.59 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 1.00 7.46 -51.93 -0.39 0.62 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.84 7.84 -51.93 -0.41 0.43 16 31 H 0.08 1.94 7.66 -51.93 -0.40 1.54 16 32 H 0.35 8.16 7.55 45.56 0.34 8.50 16 33 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 251.85 15.07 3.80 3.80 Total: -1.00 -26.73 251.85 -5.94 -32.67 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.81 Total: 5.24 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -0.23 Total: -21.50 kcal Atomic # 7 Polarization: -22.94 SS G_CDS: 0.62 Total: -22.32 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.30 Total: -13.48 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.73 -5.94 -32.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260903298.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.366 kcal (2) G-P(sol) polarization free energy of solvation -26.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds