Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51952 * 2 1 4 4 C 1.53094 * 109.52182 * 239.80628 * 2 1 3 5 5 O 1.42904 * 109.41237 * 182.48458 * 4 2 1 6 6 C 1.42904 * 114.09484 * 61.16082 * 5 4 2 7 7 C 1.53108 * 109.48764 * 298.88862 * 6 5 4 8 8 C 1.53008 * 109.44858 * 297.61218 * 7 6 5 9 9 C 1.53000 * 109.59748 * 177.42442 * 7 6 5 10 10 C 1.53174 * 109.15903 * 57.47281 * 7 6 5 11 11 H 1.08998 * 109.54043 * 63.06679 * 10 7 6 12 12 C 1.50698 * 109.54296 * 183.24280 * 10 7 6 13 13 H 1.07995 * 120.00383 * 64.76317 * 12 10 7 14 14 C 1.37880 * 120.00096 * 244.76417 * 12 10 7 15 15 N 1.31509 * 120.00159 * 185.05711 * 14 12 10 16 16 Si 1.86804 * 119.99656 * 4.77929 * 14 12 10 17 17 H 1.48503 * 109.47250 * 84.64124 * 16 14 12 18 18 H 1.48509 * 109.47052 * 204.64054 * 16 14 12 19 19 H 1.48502 * 109.47373 * 324.63676 * 16 14 12 20 20 H 1.08995 * 109.47280 * 294.94923 * 1 2 3 21 21 H 1.09007 * 109.46951 * 54.94729 * 1 2 3 22 22 H 1.08998 * 109.47103 * 174.94500 * 1 2 3 23 23 H 1.09000 * 109.47935 * 302.46912 * 4 2 1 24 24 H 1.09002 * 109.47985 * 62.49717 * 4 2 1 25 25 H 1.09003 * 109.48375 * 58.82227 * 6 5 4 26 26 H 1.09000 * 109.48068 * 178.84552 * 6 5 4 27 27 H 1.09005 * 109.46735 * 179.63502 * 8 7 6 28 28 H 1.08997 * 109.47488 * 299.63375 * 8 7 6 29 29 H 1.09000 * 109.47137 * 59.63948 * 8 7 6 30 30 H 1.08999 * 109.47236 * 300.27031 * 9 7 6 31 31 H 1.09001 * 109.47140 * 60.27670 * 9 7 6 32 32 H 1.09002 * 109.47141 * 180.27111 * 9 7 6 33 33 H 0.97006 * 119.99639 * 179.72621 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7257 -1.2472 5 8 3.4695 -0.7750 -1.2158 6 6 4.0043 -1.4817 -0.0947 7 6 3.5714 -0.7884 1.1999 8 6 4.1438 0.6302 1.2341 9 6 4.0889 -1.5790 2.4032 10 6 2.0418 -0.7245 1.2488 11 1 1.6354 -1.7355 1.2761 12 6 1.6077 0.0267 2.4809 13 1 1.8503 1.0736 2.5886 14 6 0.9009 -0.6224 3.4709 15 7 0.4361 0.0540 4.4985 16 14 0.5968 -2.4615 3.3486 17 1 1.7687 -3.1942 3.8918 18 1 -0.6147 -2.8160 4.1308 19 1 0.3946 -2.8363 1.9259 20 1 -0.3633 0.4335 0.9317 21 1 -0.3633 0.5903 -0.8413 22 1 -0.3633 -1.0237 -0.0905 23 1 1.6431 -1.7400 -1.2666 24 1 1.7158 -0.1899 -2.1388 25 1 3.6315 -2.5060 -0.0991 26 1 5.0925 -1.4907 -0.1562 27 1 3.8304 1.1264 2.1527 28 1 5.2322 0.5838 1.1993 29 1 3.7764 1.1911 0.3747 30 1 3.6825 -2.5900 2.3758 31 1 5.1774 -1.6238 2.3676 32 1 3.7756 -1.0863 3.3237 33 1 -0.0646 -0.4021 5.1929 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -68.838585 kcal Electronic energy + Delta-G solvation = -14001.051986 eV Core-core repulsion = 11832.998863 eV Total energy + Delta-G solvation = -2168.053123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.32887 -34.96429 -33.26104 -31.96280 -27.11539 -26.51789 -26.29656 -24.95737 -22.25117 -19.93105 -17.86116 -16.97035 -15.45764 -15.23141 -14.32250 -14.11173 -13.80068 -13.08530 -12.73098 -12.52459 -11.96757 -11.58323 -11.45912 -11.31063 -11.08600 -10.83769 -10.70700 -10.59707 -10.30035 -10.04177 -9.75885 -9.39722 -9.31535 -8.90524 -8.52056 -8.31123 -6.06855 -4.02798 3.26101 3.34378 3.35789 4.41135 4.49108 5.19564 5.58431 5.63682 5.68632 5.77513 5.92743 6.04886 6.12397 6.18845 6.24630 6.37965 6.46985 6.48842 6.51320 6.65510 6.81042 6.90673 7.08888 7.16318 7.17944 7.24296 7.38626 7.43759 7.79404 7.82063 8.55935 8.99616 9.57343 11.06326 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.017078 C = 0.014984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.725965 B = 1639.096023 C = 1868.252432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.071 0.929 4 C 0.062 3.938 5 O -0.389 6.389 6 C 0.068 3.932 7 C -0.092 4.092 8 C -0.121 4.121 9 C -0.130 4.130 10 C 0.019 3.981 11 H 0.038 0.962 12 C -0.490 4.490 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.903 5.903 16 Si 0.867 3.133 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.265 1.265 20 H 0.076 0.924 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.029 0.971 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 -3.046 -7.488 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.089 0.911 4 C -0.014 4.014 5 O -0.308 6.308 6 C -0.009 4.009 7 C -0.092 4.092 8 C -0.179 4.179 9 C -0.187 4.187 10 C 0.000 4.000 11 H 0.056 0.944 12 C -0.527 4.527 13 H 0.094 0.906 14 C -0.128 4.128 15 N -0.541 5.541 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.220 1.220 19 H -0.191 1.191 20 H 0.095 0.905 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.836 -2.978 -7.443 8.887 hybrid contribution -0.430 -1.225 0.308 1.334 sum 3.406 -4.203 -7.134 8.953 Atomic orbital electron populations 1.21646 0.95558 1.00131 1.01829 1.21856 0.95754 1.00526 0.95231 0.91114 1.22732 0.80861 0.99082 0.98760 1.87788 1.20655 1.76819 1.45502 1.22720 0.97589 0.93934 0.86630 1.21299 0.99358 0.95609 0.92964 1.21668 0.97532 0.96331 1.02320 1.21706 0.98156 0.98996 0.99854 1.19435 0.89884 0.96556 0.94100 0.94370 1.20864 1.33614 0.97970 1.00292 0.90650 1.25040 0.95132 0.97204 0.95397 1.69898 1.37159 1.35702 1.11333 0.87077 0.77884 0.87448 0.78069 1.20024 1.21951 1.19074 0.90455 0.94733 0.94340 0.94420 0.90362 0.94514 0.90325 0.91509 0.95168 0.93179 0.94389 0.94530 0.90645 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.08 37.16 0.34 -2.27 16 2 C -0.11 -2.31 2.04 -90.48 -0.18 -2.50 16 3 H 0.07 1.48 6.64 -51.93 -0.34 1.13 16 4 C 0.06 1.12 6.13 37.21 0.23 1.35 16 5 O -0.39 -7.31 10.19 -35.23 -0.36 -7.67 16 6 C 0.07 1.23 5.54 37.21 0.21 1.43 16 7 C -0.09 -1.84 0.55 -154.36 -0.08 -1.92 16 8 C -0.12 -2.37 7.76 37.16 0.29 -2.08 16 9 C -0.13 -2.56 7.85 37.16 0.29 -2.26 16 10 C 0.02 0.43 0.90 -91.59 -0.08 0.35 16 11 H 0.04 0.90 4.49 -51.93 -0.23 0.67 16 12 C -0.49 -12.74 5.69 -34.44 -0.20 -12.94 16 13 H 0.08 2.16 7.16 -52.49 -0.38 1.79 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 16 Si 0.87 21.08 26.66 -169.99 -4.53 16.55 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.24 6.21 56.52 0.35 -5.89 16 20 H 0.08 1.70 7.18 -51.93 -0.37 1.33 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.07 1.42 6.64 -51.93 -0.35 1.07 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.98 6.15 -51.93 -0.32 0.66 16 30 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.66 7.33 -51.93 -0.38 1.28 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 249.13 15.07 3.75 3.75 Total: -1.00 -27.86 249.13 -5.00 -32.86 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.35 Total: -0.71 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 0.71 Total: -18.93 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.77 Total: -25.85 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.36 Total: -7.67 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.53 Total: 16.55 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.86 -5.00 -32.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds