Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.51952 * 2 1 4 4 C 1.53094 * 109.52182 * 239.80628 * 2 1 3 5 5 O 1.42904 * 109.41237 * 182.48458 * 4 2 1 6 6 C 1.42904 * 114.09484 * 61.16082 * 5 4 2 7 7 C 1.53108 * 109.48764 * 298.88862 * 6 5 4 8 8 C 1.53008 * 109.44858 * 297.61218 * 7 6 5 9 9 C 1.53000 * 109.59748 * 177.42442 * 7 6 5 10 10 C 1.53174 * 109.15903 * 57.47281 * 7 6 5 11 11 H 1.08998 * 109.54043 * 63.06679 * 10 7 6 12 12 C 1.50698 * 109.54296 * 183.24280 * 10 7 6 13 13 H 1.07995 * 120.00383 * 64.76317 * 12 10 7 14 14 C 1.37880 * 120.00096 * 244.76417 * 12 10 7 15 15 N 1.31509 * 120.00159 * 185.05711 * 14 12 10 16 16 Si 1.86804 * 119.99656 * 4.77929 * 14 12 10 17 17 H 1.48503 * 109.47250 * 84.64124 * 16 14 12 18 18 H 1.48509 * 109.47052 * 204.64054 * 16 14 12 19 19 H 1.48502 * 109.47373 * 324.63676 * 16 14 12 20 20 H 1.08995 * 109.47280 * 294.94923 * 1 2 3 21 21 H 1.09007 * 109.46951 * 54.94729 * 1 2 3 22 22 H 1.08998 * 109.47103 * 174.94500 * 1 2 3 23 23 H 1.09000 * 109.47935 * 302.46912 * 4 2 1 24 24 H 1.09002 * 109.47985 * 62.49717 * 4 2 1 25 25 H 1.09003 * 109.48375 * 58.82227 * 6 5 4 26 26 H 1.09000 * 109.48068 * 178.84552 * 6 5 4 27 27 H 1.09005 * 109.46735 * 179.63502 * 8 7 6 28 28 H 1.08997 * 109.47488 * 299.63375 * 8 7 6 29 29 H 1.09000 * 109.47137 * 59.63948 * 8 7 6 30 30 H 1.08999 * 109.47236 * 300.27031 * 9 7 6 31 31 H 1.09001 * 109.47140 * 60.27670 * 9 7 6 32 32 H 1.09002 * 109.47141 * 180.27111 * 9 7 6 33 33 H 0.97006 * 119.99639 * 179.72621 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7257 -1.2472 5 8 3.4695 -0.7750 -1.2158 6 6 4.0043 -1.4817 -0.0947 7 6 3.5714 -0.7884 1.1999 8 6 4.1438 0.6302 1.2341 9 6 4.0889 -1.5790 2.4032 10 6 2.0418 -0.7245 1.2488 11 1 1.6354 -1.7355 1.2761 12 6 1.6077 0.0267 2.4809 13 1 1.8503 1.0736 2.5886 14 6 0.9009 -0.6224 3.4709 15 7 0.4361 0.0540 4.4985 16 14 0.5968 -2.4615 3.3486 17 1 1.7687 -3.1942 3.8918 18 1 -0.6147 -2.8160 4.1308 19 1 0.3946 -2.8363 1.9259 20 1 -0.3633 0.4335 0.9317 21 1 -0.3633 0.5903 -0.8413 22 1 -0.3633 -1.0237 -0.0905 23 1 1.6431 -1.7400 -1.2666 24 1 1.7158 -0.1899 -2.1388 25 1 3.6315 -2.5060 -0.0991 26 1 5.0925 -1.4907 -0.1562 27 1 3.8304 1.1264 2.1527 28 1 5.2322 0.5838 1.1993 29 1 3.7764 1.1911 0.3747 30 1 3.6825 -2.5900 2.3758 31 1 5.1774 -1.6238 2.3676 32 1 3.7756 -1.0863 3.3237 33 1 -0.0646 -0.4021 5.1929 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -86.185050 kcal Electronic energy + Delta-G solvation = -14001.804185 eV Core-core repulsion = 11832.998863 eV Total energy + Delta-G solvation = -2168.805322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88469 -36.56994 -34.86504 -33.97018 -29.00442 -28.09344 -27.76140 -26.55402 -24.03010 -21.51832 -19.50683 -19.00144 -16.94824 -16.77975 -16.03647 -15.79885 -15.43518 -14.78944 -14.64710 -14.07440 -13.65506 -13.18685 -13.11417 -13.00686 -12.59866 -12.54346 -12.37314 -12.30431 -11.95178 -11.77981 -11.49895 -11.17006 -11.00125 -10.65011 -10.49089 -9.96417 -8.20453 -6.17869 1.32553 1.34135 1.41624 2.37610 3.10848 3.14998 4.02012 4.09369 4.17908 4.20812 4.41126 4.59363 4.66974 4.71934 4.81863 4.86629 4.87176 4.94781 4.98116 5.04896 5.18407 5.27439 5.44428 5.50478 5.52911 5.59331 5.71725 5.76979 5.82628 6.39215 6.44738 6.86303 7.44498 8.96735 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.017078 C = 0.014984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.725965 B = 1639.096023 C = 1868.252432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.057 0.943 4 C 0.067 3.933 5 O -0.393 6.393 6 C 0.071 3.929 7 C -0.096 4.096 8 C -0.114 4.114 9 C -0.128 4.128 10 C 0.016 3.984 11 H 0.032 0.968 12 C -0.470 4.470 13 H 0.034 0.966 14 C 0.019 3.981 15 N -0.955 5.955 16 Si 0.918 3.082 17 H -0.264 1.264 18 H -0.299 1.299 19 H -0.246 1.246 20 H 0.040 0.960 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -4.725 -9.784 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.135 4.135 3 H 0.075 0.925 4 C -0.010 4.010 5 O -0.312 6.312 6 C -0.006 4.006 7 C -0.097 4.097 8 C -0.171 4.171 9 C -0.185 4.185 10 C -0.003 4.003 11 H 0.050 0.950 12 C -0.508 4.508 13 H 0.052 0.948 14 C -0.177 4.177 15 N -0.596 5.596 16 Si 0.744 3.256 17 H -0.189 1.189 18 H -0.226 1.226 19 H -0.171 1.171 20 H 0.059 0.941 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.123 0.877 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.901 -4.662 -9.767 11.880 hybrid contribution -0.725 -0.590 1.013 1.378 sum 4.175 -5.252 -8.754 11.029 Atomic orbital electron populations 1.21580 0.95179 1.00812 1.01223 1.21808 0.96164 0.99875 0.95663 0.92454 1.22751 0.80546 0.99566 0.98123 1.87799 1.20951 1.76960 1.45469 1.22753 0.99218 0.93828 0.84769 1.21296 0.97356 0.96203 0.94826 1.21573 0.99151 0.95888 1.00523 1.21659 1.00296 0.98498 0.98033 1.19450 0.91986 0.95633 0.93254 0.94960 1.20980 1.31976 0.96271 1.01591 0.94810 1.25719 0.95484 1.01301 0.95186 1.70048 1.39333 1.37544 1.12720 0.86227 0.77757 0.82635 0.78946 1.18912 1.22587 1.17064 0.94114 0.91651 0.93627 0.93414 0.87657 0.93497 0.87652 0.94653 0.92538 0.93452 0.94092 0.91340 0.94049 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.08 71.98 0.65 -4.23 16 2 C -0.12 -4.49 2.04 -10.70 -0.02 -4.51 16 3 H 0.06 2.36 6.64 -2.39 -0.02 2.34 16 4 C 0.07 2.13 6.13 72.01 0.44 2.57 16 5 O -0.39 -13.14 10.19 -148.98 -1.52 -14.66 16 6 C 0.07 2.26 5.54 72.02 0.40 2.66 16 7 C -0.10 -3.65 0.55 -52.08 -0.03 -3.68 16 8 C -0.11 -4.32 7.76 71.98 0.56 -3.76 16 9 C -0.13 -4.76 7.85 71.98 0.57 -4.20 16 10 C 0.02 0.68 0.90 -11.42 -0.01 0.67 16 11 H 0.03 1.45 4.49 -2.39 -0.01 1.44 16 12 C -0.47 -25.14 5.69 25.60 0.15 -25.00 16 13 H 0.03 2.05 7.16 -2.91 -0.02 2.03 16 14 C 0.02 1.06 5.47 84.66 0.46 1.53 16 15 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 16 Si 0.92 43.36 26.66 68.60 1.83 45.19 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 19 H -0.25 -10.78 6.21 99.48 0.62 -10.16 16 20 H 0.04 1.80 7.18 -2.39 -0.02 1.78 16 21 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.03 1.52 6.64 -2.38 -0.02 1.51 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.79 6.15 -2.39 -0.01 1.77 16 30 H 0.04 1.48 7.85 -2.39 -0.02 1.46 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.81 7.33 -2.39 -0.02 1.79 16 33 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -61.10 249.13 4.75 -56.35 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.97 Total: 9.49 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 3.17 Total: -37.95 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.52 Total: -14.66 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.83 Total: 45.19 kcal Total: -61.10 4.75 -56.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.831 kcal (2) G-P(sol) polarization free energy of solvation -61.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds