Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.52283 * 2 1 4 4 C 1.53089 * 109.51958 * 120.12519 * 2 1 3 5 5 O 1.42908 * 109.41625 * 177.51240 * 4 2 1 6 6 C 1.42902 * 114.09542 * 298.84386 * 5 4 2 7 7 C 1.53098 * 109.41534 * 61.15553 * 6 5 4 8 8 C 1.52998 * 109.52343 * 62.29730 * 7 6 5 9 9 C 1.53008 * 109.51993 * 182.48703 * 7 6 5 10 10 C 1.53176 * 109.51896 * 239.80700 * 2 1 3 11 11 H 1.08995 * 109.54766 * 302.98481 * 10 2 1 12 12 C 1.50701 * 109.54260 * 63.16224 * 10 2 1 13 13 H 1.08000 * 119.99920 * 54.81124 * 12 10 2 14 14 C 1.37872 * 119.99974 * 234.81099 * 12 10 2 15 15 N 1.31512 * 120.00102 * 6.27511 * 14 12 10 16 16 Si 1.86801 * 120.00092 * 186.28173 * 14 12 10 17 17 H 1.48496 * 109.47479 * 89.99657 * 16 14 12 18 18 H 1.48501 * 109.47021 * 210.00080 * 16 14 12 19 19 H 1.48502 * 109.46866 * 329.99684 * 16 14 12 20 20 H 1.09000 * 109.46751 * 294.02436 * 1 2 3 21 21 H 1.08995 * 109.47206 * 54.02172 * 1 2 3 22 22 H 1.08997 * 109.47193 * 174.02839 * 1 2 3 23 23 H 1.08998 * 109.48197 * 57.53341 * 4 2 1 24 24 H 1.08999 * 109.48249 * 297.49235 * 4 2 1 25 25 H 1.09003 * 109.48343 * 181.13610 * 6 5 4 26 26 H 1.09000 * 109.48188 * 301.17575 * 6 5 4 27 27 H 1.09003 * 109.46728 * 60.00021 * 8 7 6 28 28 H 1.08998 * 109.47143 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.47084 * 299.99847 * 8 7 6 30 30 H 1.08998 * 109.47177 * 60.00111 * 9 7 6 31 31 H 1.09002 * 109.46562 * 180.02562 * 9 7 6 32 32 H 1.09000 * 109.46706 * 299.99867 * 9 7 6 33 33 H 0.97006 * 120.00511 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0415 -0.7242 1.2480 5 8 3.4694 -0.7737 1.2168 6 6 4.0043 -1.4817 0.0966 7 6 3.5716 -0.7879 -1.1977 8 6 4.1421 0.6313 -1.2325 9 6 4.0910 -1.5788 -2.4001 10 6 2.0418 -0.7261 -1.2479 11 1 1.6366 -1.7376 -1.2732 12 6 1.6059 0.0225 -2.4810 13 1 1.8462 1.0698 -2.5901 14 6 0.9005 -0.6295 -3.4700 15 7 0.5008 -1.8687 -3.2846 16 14 0.5125 0.2470 -5.0733 17 1 1.6100 0.0103 -6.0451 18 1 -0.7616 -0.2768 -5.6280 19 1 0.3803 1.7045 -4.8212 20 1 -0.3633 0.4184 0.9387 21 1 -0.3633 0.6037 -0.8316 22 1 -0.3633 -1.0221 -0.1069 23 1 1.6431 -1.7385 1.2687 24 1 1.7159 -0.1873 2.1390 25 1 5.0925 -1.4904 0.1580 26 1 3.6314 -2.5059 0.1021 27 1 5.2304 0.5865 -1.1912 28 1 3.8331 1.1246 -2.1541 29 1 3.7688 1.1941 -0.3769 30 1 3.6813 -2.5886 -2.3752 31 1 3.7828 -1.0839 -3.3211 32 1 5.1792 -1.6271 -2.3605 33 1 0.0048 -2.3276 -3.9805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973179.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = -72.399192 kcal Electronic energy + Delta-G solvation = -13928.700728 eV Core-core repulsion = 11760.493206 eV Total energy + Delta-G solvation = -2168.207522 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10285 -34.79384 -33.08661 -31.84477 -26.60741 -26.31529 -26.09485 -24.82813 -22.52633 -19.73907 -17.81884 -16.35860 -15.25996 -15.04710 -14.36919 -14.01515 -13.71087 -12.95635 -12.44541 -12.29957 -11.61133 -11.43131 -11.30365 -11.07954 -10.89971 -10.84290 -10.62105 -10.48053 -10.21134 -9.98621 -9.74327 -9.27014 -9.17940 -8.72193 -8.38794 -8.19572 -5.99600 -3.98463 3.29360 3.37335 3.40046 4.44070 4.64626 5.27856 5.78369 5.83518 5.86510 5.97339 6.10113 6.21180 6.33290 6.34960 6.45012 6.55085 6.60210 6.67191 6.70137 6.91751 6.92607 7.16961 7.26459 7.32493 7.36392 7.45377 7.66562 7.85269 7.96375 7.99193 8.49239 9.10390 9.62240 11.09258 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038449 B = 0.014879 C = 0.012687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.062059 B = 1881.452837 C = 2206.472202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 H 0.059 0.941 4 C 0.064 3.936 5 O -0.393 6.393 6 C 0.070 3.930 7 C -0.092 4.092 8 C -0.122 4.122 9 C -0.117 4.117 10 C 0.047 3.953 11 H 0.067 0.933 12 C -0.495 4.495 13 H 0.052 0.948 14 C 0.068 3.932 15 N -0.892 5.892 16 Si 0.880 3.120 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.275 1.275 20 H 0.024 0.976 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.025 0.975 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 1.117 4.379 5.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.136 4.136 3 H 0.078 0.922 4 C -0.013 4.013 5 O -0.312 6.312 6 C -0.007 4.007 7 C -0.092 4.092 8 C -0.179 4.179 9 C -0.174 4.174 10 C 0.028 3.972 11 H 0.085 0.915 12 C -0.533 4.533 13 H 0.071 0.929 14 C -0.133 4.133 15 N -0.530 5.530 16 Si 0.708 3.292 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 H 0.043 0.957 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.384 1.049 4.424 5.668 hybrid contribution -0.445 0.276 -1.219 1.327 sum 2.938 1.325 3.204 4.545 Atomic orbital electron populations 1.21482 0.95569 1.01603 0.99173 1.21917 0.95756 0.99888 0.96067 0.92236 1.22706 0.80739 0.99270 0.98557 1.87759 1.20811 1.76841 1.45790 1.22693 0.97142 0.94178 0.86661 1.21311 1.00345 0.94697 0.92887 1.21685 0.97401 0.97101 1.01749 1.21533 0.96816 0.99775 0.99271 1.19047 0.88174 0.98508 0.91442 0.91461 1.20955 1.33984 0.96113 1.02231 0.92930 1.24907 0.95365 0.94880 0.98134 1.69900 1.38338 1.11361 1.33445 0.86792 0.77678 0.80059 0.84664 1.20754 1.21462 1.19991 0.95695 0.91914 0.93314 0.94229 0.90863 0.90818 0.94268 0.95458 0.92169 0.93354 0.93644 0.91551 0.95630 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 8.88 37.16 0.33 -2.15 16 2 C -0.12 -2.48 2.04 -90.48 -0.18 -2.67 16 3 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 4 C 0.06 1.22 6.13 37.20 0.23 1.45 16 5 O -0.39 -7.83 10.19 -35.23 -0.36 -8.19 16 6 C 0.07 1.35 5.54 37.21 0.21 1.55 16 7 C -0.09 -1.92 0.55 -154.36 -0.08 -2.01 16 8 C -0.12 -2.44 7.76 37.16 0.29 -2.15 16 9 C -0.12 -2.42 8.28 37.16 0.31 -2.12 16 10 C 0.05 1.10 1.30 -91.59 -0.12 0.98 16 11 H 0.07 1.80 6.93 -51.93 -0.36 1.44 16 12 C -0.49 -12.68 5.34 -34.44 -0.18 -12.86 16 13 H 0.05 1.37 6.94 -52.49 -0.36 1.01 16 14 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 15 N -0.89 -24.69 12.62 55.43 0.70 -23.99 16 16 Si 0.88 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 21 H 0.06 1.38 7.54 -51.93 -0.39 0.99 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.26 6.67 -51.93 -0.35 0.91 16 29 H 0.05 0.97 6.13 -51.93 -0.32 0.65 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.51 7.35 -51.93 -0.38 1.12 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 254.72 15.07 3.84 3.84 Total: -1.00 -26.72 254.72 -5.60 -32.32 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.45 Total: -1.50 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 0.69 Total: -18.25 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.70 Total: -23.99 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.36 Total: -8.19 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.72 -5.60 -32.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973179.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.078 kcal (2) G-P(sol) polarization free energy of solvation -26.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds