Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52915 * 1 3 3 H 1.10755 * 107.13296 * 2 1 4 4 C 1.52446 * 110.23812 * 116.67067 * 2 1 3 5 5 O 1.42866 * 109.91253 * 74.89310 * 4 2 1 6 6 C 1.42877 * 112.53961 * 64.38469 * 5 4 2 7 7 C 1.52745 * 109.57454 * 294.38410 * 6 5 4 8 8 C 1.54087 * 108.14021 * 171.43828 * 7 6 5 9 9 C 1.53117 * 109.67943 * 288.88998 * 7 6 5 10 10 C 1.51973 * 111.40132 * 242.29595 * 2 1 3 11 11 H 1.10367 * 108.38339 * 155.44458 * 10 2 1 12 12 C 1.51417 * 109.18267 * 39.00787 * 10 2 1 13 13 H 1.08004 * 120.00169 * 245.48037 * 12 10 2 14 14 C 1.37875 * 120.00268 * 65.48308 * 12 10 2 15 15 N 1.31516 * 119.99829 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 120.00416 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46759 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47197 * 119.99603 * 16 14 12 19 19 H 1.48500 * 109.47109 * 239.99909 * 16 14 12 20 20 H 1.08995 * 109.46939 * 303.33262 * 1 2 3 21 21 H 1.08997 * 109.46853 * 63.32952 * 1 2 3 22 22 H 1.09004 * 109.46930 * 183.32956 * 1 2 3 23 23 H 1.09173 * 109.70383 * 314.72799 * 4 2 1 24 24 H 1.09170 * 109.68853 * 195.05674 * 4 2 1 25 25 H 1.09067 * 109.40579 * 54.58797 * 6 5 4 26 26 H 1.09085 * 109.37618 * 174.21365 * 6 5 4 27 27 H 1.08997 * 109.46995 * 60.00275 * 8 7 6 28 28 H 1.08999 * 109.47108 * 179.97438 * 8 7 6 29 29 H 1.08994 * 109.47286 * 300.00108 * 8 7 6 30 30 H 1.08994 * 109.47089 * 68.16173 * 9 7 6 31 31 H 1.08998 * 109.47201 * 188.16449 * 9 7 6 32 32 H 1.08999 * 109.46496 * 308.15971 * 9 7 6 33 33 H 0.97000 * 119.99708 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5291 0.0000 0.0000 3 1 1.8554 1.0584 0.0000 4 6 2.0565 -0.6420 1.2782 5 8 1.8963 -2.0601 1.2122 6 6 2.6798 -2.6521 0.1744 7 6 2.1715 -2.1763 -1.1852 8 6 3.1635 -2.6551 -2.2626 9 6 0.8115 -2.8152 -1.4797 10 6 2.0837 -0.6578 -1.2527 11 1 3.0976 -0.2615 -1.4342 12 6 1.2306 -0.2647 -2.4403 13 1 0.6537 -1.0138 -2.9624 14 6 1.1903 1.0494 -2.8554 15 7 1.8932 1.9615 -2.2201 16 14 0.1372 1.5346 -4.3201 17 1 -0.5507 0.3321 -4.8550 18 1 -0.8746 2.5340 -3.8930 19 1 0.9994 2.1232 -5.3763 20 1 -0.3633 0.5647 0.8586 21 1 -0.3633 0.4613 -0.9183 22 1 -0.3633 -1.0260 0.0597 23 1 1.5052 -0.2568 2.1381 24 1 3.1150 -0.4042 1.3996 25 1 3.7237 -2.3610 0.2974 26 1 2.5998 -3.7383 0.2353 27 1 3.2227 -3.7433 -2.2441 28 1 2.8206 -2.3269 -3.2438 29 1 4.1488 -2.2343 -2.0622 30 1 0.0656 -2.4143 -0.7936 31 1 0.5193 -2.5911 -2.5056 32 1 0.8818 -3.8952 -1.3496 33 1 1.8645 2.8862 -2.5119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = -79.850592 kcal Electronic energy + Delta-G solvation = -14025.412152 eV Core-core repulsion = 11856.881512 eV Total energy + Delta-G solvation = -2168.530639 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.72570 -36.59077 -34.99073 -33.30986 -28.44839 -28.22493 -27.45250 -26.69094 -24.47114 -21.49092 -19.37971 -17.86864 -17.06591 -16.71066 -16.19999 -15.74652 -15.08706 -14.97225 -14.30215 -13.92332 -13.28328 -13.20960 -12.98229 -12.89130 -12.72691 -12.55475 -12.35549 -11.93544 -11.77641 -11.64805 -11.36104 -11.10527 -10.93578 -10.41107 -10.24041 -9.84510 -8.00891 -6.04958 1.38526 1.43187 1.51263 2.47312 3.21273 3.29964 4.18638 4.20895 4.27526 4.40043 4.48921 4.57482 4.74908 4.83458 4.85221 4.96959 5.00470 5.06942 5.08498 5.19973 5.28235 5.46495 5.53427 5.63429 5.71965 5.82088 5.86843 6.01745 6.17378 6.43001 6.48958 7.03087 7.58339 9.06542 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.015027 C = 0.013033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.481148 B = 1862.827216 C = 2147.813604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 H 0.047 0.953 4 C 0.067 3.933 5 O -0.389 6.389 6 C 0.070 3.930 7 C -0.089 4.089 8 C -0.126 4.126 9 C -0.120 4.120 10 C 0.064 3.936 11 H -0.014 1.014 12 C -0.494 4.494 13 H 0.062 0.938 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.933 3.067 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.288 1.288 20 H 0.032 0.968 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -7.295 3.441 8.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.124 4.124 3 H 0.065 0.935 4 C -0.010 4.010 5 O -0.308 6.308 6 C -0.007 4.007 7 C -0.089 4.089 8 C -0.183 4.183 9 C -0.177 4.177 10 C 0.045 3.955 11 H 0.004 0.996 12 C -0.533 4.533 13 H 0.080 0.920 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.213 1.213 19 H -0.215 1.215 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.065 -7.212 3.544 8.037 hybrid contribution -0.196 1.184 -1.169 1.675 sum -0.131 -6.029 2.376 6.481 Atomic orbital electron populations 1.21545 0.95715 0.99973 0.99459 1.21334 0.96350 0.99776 0.94944 0.93494 1.22612 0.99257 0.81069 0.98034 1.87906 1.68907 1.20412 1.53549 1.22723 0.93360 0.98271 0.86346 1.21052 0.96366 0.96531 0.94960 1.21932 0.97641 1.00230 0.98540 1.21800 0.96454 0.98446 1.00968 1.18459 0.94583 0.89802 0.92623 0.99586 1.21733 1.26018 0.92898 1.12618 0.91954 1.25560 0.96936 0.97221 0.98639 1.70056 1.42710 1.01621 1.41870 0.85879 0.79115 0.78280 0.80676 1.19053 1.21349 1.21481 0.94879 0.93902 0.93281 0.88822 0.94311 0.93896 0.87664 0.91430 0.93758 0.94153 0.93382 0.93509 0.92649 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 8.50 71.95 0.61 -4.21 16 2 C -0.10 -4.77 2.15 -11.34 -0.02 -4.79 16 3 H 0.05 2.45 7.07 -1.44 -0.01 2.44 16 4 C 0.07 2.56 6.18 71.80 0.44 3.00 16 5 O -0.39 -14.53 10.71 -148.98 -1.60 -16.12 16 6 C 0.07 2.38 5.39 71.90 0.39 2.76 16 7 C -0.09 -3.44 0.57 -52.11 -0.03 -3.47 16 8 C -0.13 -4.47 8.07 72.35 0.58 -3.89 16 9 C -0.12 -4.43 7.57 72.02 0.55 -3.88 16 10 C 0.06 3.04 1.27 -11.90 -0.02 3.03 16 11 H -0.01 -0.78 7.86 -1.65 -0.01 -0.79 16 12 C -0.49 -25.58 5.66 25.83 0.15 -25.44 16 13 H 0.06 3.20 5.37 -2.91 -0.02 3.18 16 14 C 0.01 0.75 4.61 84.65 0.39 1.14 16 15 N -0.92 -52.68 11.85 21.45 0.25 -52.42 16 16 Si 0.93 43.39 29.54 68.60 2.03 45.42 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.04 2.09 6.12 -2.39 -0.01 2.07 16 22 H 0.05 2.04 5.63 -2.38 -0.01 2.03 16 23 H 0.09 3.19 8.09 -2.30 -0.02 3.18 16 24 H 0.04 1.44 8.08 -2.30 -0.02 1.42 16 25 H 0.04 1.42 8.03 -2.35 -0.02 1.40 16 26 H 0.11 2.99 8.05 -2.34 -0.02 2.97 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.72 7.70 -2.39 -0.02 1.70 16 29 H 0.04 1.42 8.09 -2.39 -0.02 1.40 16 30 H 0.05 1.87 5.36 -2.39 -0.01 1.86 16 31 H 0.05 1.84 6.01 -2.39 -0.01 1.82 16 32 H 0.05 1.70 8.06 -2.39 -0.02 1.68 16 33 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -57.45 247.49 4.81 -52.64 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.09 Total: 6.25 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.04 Total: -35.76 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.25 Total: -52.42 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.60 Total: -16.12 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -57.45 4.81 -52.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.213 kcal (2) G-P(sol) polarization free energy of solvation -57.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds