Wall clock time and date at job start Mon Mar 30 2020 01:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46917 * 2 1 4 4 C 1.53004 * 109.47325 * 120.00188 * 2 1 3 5 5 C 1.52999 * 112.99720 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.46626 * 177.83975 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99835 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47183 * 60.00274 * 11 9 7 13 13 H 1.48496 * 109.47425 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47216 * 300.00267 * 11 9 7 15 15 C 1.54040 * 113.92133 * 311.93216 * 4 2 1 16 16 O 1.44180 * 85.51750 * 91.66254 * 15 4 2 17 17 C 1.44179 * 93.33917 * 24.18887 * 16 15 4 18 18 H 1.09001 * 109.47345 * 299.99658 * 1 2 3 19 19 H 1.09004 * 109.47744 * 60.00293 * 1 2 3 20 20 H 1.09009 * 109.47260 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47345 * 240.00342 * 2 1 3 22 22 H 1.09003 * 109.46776 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46935 * 299.99879 * 3 2 1 24 24 H 1.08997 * 109.47171 * 60.00372 * 3 2 1 25 25 H 1.08993 * 109.47839 * 57.84044 * 5 4 2 26 26 H 1.09000 * 109.47160 * 297.83606 * 5 4 2 27 27 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 28 28 H 1.09001 * 109.46801 * 59.99811 * 6 5 4 29 29 H 0.96992 * 120.00038 * 180.02562 * 10 9 7 30 30 H 1.08996 * 113.85771 * 205.80528 * 15 4 2 31 31 H 1.08998 * 113.86456 * 337.51247 * 15 4 2 32 32 H 1.09002 * 113.86620 * 221.65959 * 17 16 15 33 33 H 1.09001 * 113.86411 * 89.95880 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5671 -0.7678 1.3310 6 6 3.9874 -1.4559 2.6314 7 6 5.4915 -1.5022 2.7116 8 1 6.0880 -1.0833 1.9147 9 6 6.1063 -2.0795 3.8024 10 7 5.3799 -2.5902 4.7727 11 14 7.9706 -2.1377 3.9017 12 1 8.5111 -0.7547 3.8757 13 1 8.3786 -2.8053 5.1638 14 1 8.5045 -2.8996 2.7442 15 6 1.3611 -0.2654 2.5546 16 8 0.4264 -1.3354 2.3092 17 6 1.3614 -2.0805 1.5033 18 1 -0.3634 0.5138 0.8900 19 1 -0.3635 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1299 1.4425 -0.0005 23 1 1.6765 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.9631 0.2475 1.3128 26 1 3.9596 -1.3262 0.4811 27 1 3.5949 -0.8975 3.4812 28 1 3.5914 -2.4712 2.6495 29 1 5.8123 -2.9959 5.5402 30 1 1.9739 -0.4107 3.4443 31 1 0.9182 0.7289 2.4975 32 1 0.9186 -2.5258 0.6124 33 1 1.9742 -2.7799 2.0720 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:02 Heat of formation + Delta-G solvation = -53.472873 kcal Electronic energy + Delta-G solvation = -13282.798443 eV Core-core repulsion = 11115.411628 eV Total energy + Delta-G solvation = -2167.386816 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.04614 -36.18783 -35.41375 -33.19382 -29.18656 -28.27470 -27.32030 -26.05750 -24.16607 -21.89436 -18.93778 -18.64454 -17.30709 -16.91348 -16.50106 -16.22958 -15.52908 -14.72334 -14.50891 -14.08582 -13.93085 -13.34490 -13.15822 -12.88411 -12.83886 -12.60270 -12.42212 -12.13164 -12.02293 -11.61624 -11.47013 -11.22953 -10.99489 -10.80420 -10.48598 -10.20903 -8.18859 -6.29391 1.39514 1.41950 1.49930 2.40941 2.88041 3.13915 3.32395 3.80270 4.08318 4.25594 4.32359 4.52241 4.58085 4.61922 4.68273 4.85565 4.86075 4.92041 4.99003 5.07656 5.12954 5.20376 5.26207 5.36431 5.45044 5.52773 5.56820 5.58426 5.80152 5.88448 6.27385 6.88197 7.39416 8.92193 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055441 B = 0.008824 C = 0.008063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.924421 B = 3172.510036 C = 3471.604801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.145 4.145 4 C -0.111 4.111 5 C -0.092 4.092 6 C 0.022 3.978 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.000 4.000 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.036 3.964 16 O -0.394 6.394 17 C 0.035 3.965 18 H 0.049 0.951 19 H 0.067 0.933 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.054 0.946 27 H -0.002 1.002 28 H -0.004 1.004 29 H 0.262 0.738 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 5.695 -9.383 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C -0.202 4.202 4 C -0.111 4.111 5 C -0.129 4.129 6 C -0.014 4.014 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.192 1.192 15 C -0.040 4.040 16 O -0.314 6.314 17 C -0.041 4.041 18 H 0.069 0.931 19 H 0.086 0.914 20 H 0.069 0.931 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.016 0.984 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.247 5.566 -9.144 12.928 hybrid contribution 1.196 -0.383 0.634 1.407 sum -6.051 5.183 -8.510 11.658 Atomic orbital electron populations 1.21807 0.94032 1.01853 1.01666 1.20846 0.96329 0.96414 0.94999 1.21829 1.01084 0.94994 1.02289 1.23638 0.95827 0.95240 0.96372 1.21432 0.93026 1.00335 0.98121 1.19180 0.94629 0.94481 0.93150 1.21710 0.93658 1.37718 1.05032 0.92319 1.25948 1.03381 0.95034 0.95416 1.70092 1.37372 1.40072 1.09766 0.85560 0.79654 0.78701 0.77501 1.19195 1.20989 1.19241 1.24194 0.89842 0.92487 0.97509 1.89529 1.33301 1.36039 1.72490 1.24183 0.89876 0.95122 0.94943 0.93148 0.91393 0.93098 0.90173 0.92945 0.90793 0.92859 0.92177 0.92748 0.98388 0.98614 0.92884 0.91776 0.87998 0.87741 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 7.91 71.98 0.57 -2.61 16 2 C -0.07 -1.73 2.66 -10.79 -0.03 -1.76 16 3 C -0.14 -3.35 8.80 71.98 0.63 -2.72 16 4 C -0.11 -3.68 0.95 -51.48 -0.05 -3.73 16 5 C -0.09 -3.66 4.61 30.60 0.14 -3.52 16 6 C 0.02 1.15 4.19 29.85 0.13 1.28 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 10 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 11 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 15 C 0.04 1.27 7.34 72.28 0.53 1.80 16 16 O -0.39 -14.48 10.86 -148.98 -1.62 -16.10 16 17 C 0.04 1.23 7.53 72.27 0.54 1.77 16 18 H 0.05 1.25 6.54 -2.39 -0.02 1.23 16 19 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.05 1.25 6.53 -2.38 -0.02 1.23 16 21 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.05 1.31 6.68 -2.39 -0.02 1.29 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.23 7.24 -2.39 -0.02 1.21 16 25 H 0.06 2.33 6.68 -2.39 -0.02 2.31 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.00 -0.12 6.04 -2.39 -0.01 -0.13 16 28 H 0.00 -0.24 6.12 -2.39 -0.01 -0.26 16 29 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.06 2.66 5.73 -2.39 -0.01 2.65 16 31 H 0.10 3.04 6.51 -2.39 -0.02 3.03 16 32 H 0.10 3.03 7.33 -2.39 -0.02 3.01 16 33 H 0.06 2.60 5.93 -2.39 -0.01 2.58 16 Total: -1.00 -63.07 253.51 4.93 -58.14 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.08 Total: 7.93 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 3.16 Total: -39.57 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.62 Total: -16.10 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -63.07 4.93 -58.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.663 kcal (2) G-P(sol) polarization free energy of solvation -63.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds