Wall clock time and date at job start Mon Mar 30 2020 02:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99785 * 2 1 4 4 H 1.09003 * 108.85157 * 31.43560 * 3 2 1 5 5 C 1.54076 * 108.79723 * 272.92477 * 3 2 1 6 6 C 1.54061 * 112.81691 * 197.55762 * 5 3 2 7 7 C 1.50476 * 112.50196 * 318.28597 * 6 5 3 8 8 C 1.54248 * 108.52488 * 94.14853 * 7 6 5 9 9 C 1.45546 * 112.39985 * 280.01810 * 8 7 6 10 10 H 1.08996 * 108.89491 * 301.18100 * 9 8 7 11 11 C 1.50706 * 108.89136 * 182.59415 * 9 8 7 12 12 H 1.08005 * 119.99521 * 240.00131 * 11 9 8 13 13 C 1.37874 * 120.00189 * 59.99677 * 11 9 8 14 14 N 1.31516 * 119.99543 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99894 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47445 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46846 * 120.00570 * 15 13 11 18 18 H 1.48502 * 109.46979 * 240.00275 * 15 13 11 19 19 C 1.50473 * 108.88000 * 150.00002 * 3 2 1 20 20 H 1.08998 * 109.47657 * 60.00861 * 1 2 3 21 21 H 1.09004 * 109.46880 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47248 * 299.99720 * 1 2 3 23 23 H 1.08997 * 108.81307 * 318.42121 * 5 3 2 24 24 H 1.08999 * 108.81277 * 76.69748 * 5 3 2 25 25 H 1.09003 * 108.87693 * 79.06319 * 6 5 3 26 26 H 1.09003 * 108.87888 * 197.60334 * 6 5 3 27 27 H 1.08999 * 109.62377 * 334.43918 * 7 6 5 28 28 H 1.08993 * 109.62532 * 213.85746 * 7 6 5 29 29 H 1.08995 * 108.89711 * 159.26554 * 8 7 6 30 30 H 1.08994 * 108.89437 * 40.76981 * 8 7 6 31 31 H 0.97005 * 119.99391 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.62748 * 95.12151 * 19 3 2 33 33 H 1.08997 * 109.62546 * 334.54233 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3493 1.9852 0.5380 5 6 2.1441 1.7893 -1.4567 6 6 3.1284 2.9648 -1.6077 7 6 2.9845 3.9814 -0.5077 8 6 4.0001 3.6477 0.6042 9 6 3.5389 2.5748 1.4728 10 1 2.5933 2.8704 1.9272 11 6 4.5567 2.3579 2.5629 12 1 5.0396 1.3974 2.6674 13 6 4.8715 3.3854 3.4266 14 7 4.2831 4.5547 3.2995 15 14 6.1326 3.1162 4.7781 16 1 6.6438 1.7238 4.7080 17 1 7.2597 4.0665 4.5998 18 1 5.4970 3.3446 6.1007 19 6 3.3346 1.2489 0.7119 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 2.4906 0.9593 -2.0723 24 1 1.1636 2.1038 -1.8142 25 1 4.1466 2.5757 -1.5972 26 1 2.9486 3.4548 -2.5646 27 1 1.9730 3.9426 -0.1034 28 1 3.1866 4.9776 -0.9012 29 1 4.1709 4.5403 1.2059 30 1 4.9419 3.3490 0.1439 31 1 4.5043 5.2775 3.9074 32 1 4.1358 1.1168 -0.0153 33 1 3.3359 0.4179 1.4172 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261010778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:53 Heat of formation + Delta-G solvation = -86.589761 kcal Electronic energy + Delta-G solvation = -13422.310990 eV Core-core repulsion = 11253.488119 eV Total energy + Delta-G solvation = -2168.822872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31460 -37.81752 -35.08393 -32.59846 -31.80697 -27.87490 -26.95797 -25.36170 -24.03966 -21.12546 -20.27658 -18.64630 -17.29556 -16.51369 -16.49284 -16.08223 -15.13968 -14.91892 -14.61211 -14.49499 -13.95741 -13.17449 -12.93404 -12.83802 -12.75202 -12.61240 -12.31065 -12.14339 -11.76036 -11.57018 -11.28802 -11.09435 -10.99949 -10.61903 -10.33283 -10.25750 -8.06780 -6.22814 1.39130 1.41080 1.52694 2.42737 2.96183 3.17663 3.83465 3.98615 4.27098 4.35215 4.49831 4.56927 4.57090 4.60792 4.74181 4.82828 4.85303 4.89611 5.03622 5.10887 5.22570 5.33513 5.38709 5.44878 5.58600 5.65678 5.81236 6.05291 6.29372 6.39126 6.49773 6.92090 7.45548 8.95130 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041870 B = 0.010709 C = 0.009280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.571497 B = 2613.912534 C = 3016.409066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.097 3.903 4 H 0.043 0.957 5 C -0.126 4.126 6 C -0.106 4.106 7 C -0.114 4.114 8 C -0.105 4.105 9 C 0.052 3.948 10 H -0.010 1.010 11 C -0.535 4.535 12 H 0.048 0.952 13 C 0.011 3.989 14 N -0.916 5.916 15 Si 0.953 3.047 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.281 1.281 19 C -0.096 4.096 20 H 0.053 0.947 21 H 0.101 0.899 22 H 0.035 0.965 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 -3.712 -8.326 10.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.040 3.960 4 H 0.061 0.939 5 C -0.164 4.164 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.142 4.142 9 C 0.033 3.967 10 H 0.008 0.992 11 C -0.573 4.573 12 H 0.066 0.934 13 C -0.187 4.187 14 N -0.556 5.556 15 Si 0.778 3.222 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.206 1.206 19 C -0.134 4.134 20 H 0.071 0.929 21 H 0.119 0.881 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.143 -3.712 -8.247 10.404 hybrid contribution 0.452 0.286 1.099 1.222 sum -4.692 -3.426 -7.148 9.211 Atomic orbital electron populations 1.22933 0.80312 1.03623 1.00316 1.87898 1.21006 1.29007 1.95279 1.22034 0.94696 0.83217 0.96060 0.93920 1.22300 1.00275 0.98387 0.95417 1.21244 0.99217 0.95277 0.98659 1.21357 0.99076 0.98494 0.96273 1.20479 0.96392 1.01362 0.96014 1.17540 0.94872 0.91341 0.92917 0.99151 1.21730 1.23668 0.97478 1.14418 0.93373 1.25719 0.98219 0.95039 0.99757 1.69981 1.43971 1.03124 1.38504 0.85586 0.79143 0.78258 0.79174 1.19402 1.20398 1.20640 1.21397 0.95293 0.98686 0.98014 0.92886 0.88109 0.94606 0.91039 0.91117 0.92793 0.90285 0.93357 0.92146 0.91788 0.95462 0.93017 0.92376 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.78 113.37 1.22 1.86 16 2 O -0.41 -14.57 10.18 -148.98 -1.52 -16.08 16 3 C 0.10 3.61 2.12 30.14 0.06 3.67 16 4 H 0.04 1.68 6.26 -2.39 -0.01 1.67 16 5 C -0.13 -3.83 5.35 31.32 0.17 -3.67 16 6 C -0.11 -3.33 5.31 30.14 0.16 -3.17 16 7 C -0.11 -4.30 5.61 30.20 0.17 -4.13 16 8 C -0.10 -5.00 4.35 28.74 0.12 -4.87 16 9 C 0.05 2.65 1.64 -13.40 -0.02 2.63 16 10 H -0.01 -0.54 7.47 -2.39 -0.02 -0.56 16 11 C -0.53 -30.38 8.40 25.60 0.21 -30.17 16 12 H 0.05 2.73 7.69 -2.91 -0.02 2.71 16 13 C 0.01 0.61 5.27 84.65 0.45 1.05 16 14 N -0.92 -53.38 11.21 21.45 0.24 -53.14 16 15 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 19 C -0.10 -4.25 4.63 30.20 0.14 -4.11 16 20 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 21 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.04 0.95 8.07 -2.39 -0.02 0.93 16 23 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 24 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 25 H 0.05 1.78 6.63 -2.39 -0.02 1.77 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.84 6.98 -2.39 -0.02 1.83 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 3.50 5.69 -2.39 -0.01 3.49 16 30 H 0.03 1.29 7.47 -2.39 -0.02 1.27 16 31 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 32 H 0.06 2.47 6.98 -2.39 -0.02 2.45 16 33 H 0.04 2.09 7.78 -2.39 -0.02 2.07 16 Total: -1.00 -61.37 253.75 4.50 -56.88 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.06 Total: 6.74 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 2.69 Total: -40.91 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.24 Total: -53.14 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.52 Total: -16.08 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -61.37 4.50 -56.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261010778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.712 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds