Wall clock time and date at job start Mon Mar 30 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99899 * 2 1 4 4 H 1.08998 * 108.77481 * 31.49066 * 3 2 1 5 5 C 1.54072 * 108.87778 * 272.97329 * 3 2 1 6 6 C 1.54069 * 112.81507 * 197.50834 * 5 3 2 7 7 C 1.50473 * 112.49910 * 318.28774 * 6 5 3 8 8 C 1.54244 * 108.52587 * 94.15076 * 7 6 5 9 9 H 1.08999 * 108.81618 * 40.71739 * 8 7 6 10 10 C 1.50706 * 108.89448 * 159.25805 * 8 7 6 11 11 H 1.08004 * 119.99370 * 117.31734 * 10 8 7 12 12 C 1.37874 * 120.00112 * 297.32600 * 10 8 7 13 13 N 1.31517 * 119.99908 * 163.90443 * 12 10 8 14 14 Si 1.86799 * 120.00144 * 344.16962 * 12 10 8 15 15 H 1.48495 * 109.47388 * 179.73209 * 14 12 10 16 16 H 1.48501 * 109.47070 * 299.72812 * 14 12 10 17 17 H 1.48495 * 109.46927 * 59.73028 * 14 12 10 18 18 C 1.45538 * 112.40051 * 280.01381 * 8 7 6 19 19 C 1.50481 * 108.87695 * 150.00380 * 3 2 1 20 20 H 1.09005 * 109.46984 * 59.99799 * 1 2 3 21 21 H 1.09006 * 109.47463 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47016 * 300.00121 * 1 2 3 23 23 H 1.08992 * 108.81083 * 318.37112 * 5 3 2 24 24 H 1.08993 * 108.81012 * 76.75891 * 5 3 2 25 25 H 1.09003 * 108.87345 * 79.06711 * 6 5 3 26 26 H 1.08998 * 108.87538 * 197.60183 * 6 5 3 27 27 H 1.08995 * 109.63112 * 334.43441 * 7 6 5 28 28 H 1.09000 * 109.62199 * 213.85812 * 7 6 5 29 29 H 0.97003 * 119.99854 * 354.98754 * 13 12 10 30 30 H 1.09007 * 108.89084 * 182.69157 * 18 8 7 31 31 H 1.08996 * 108.89494 * 301.17728 * 18 8 7 32 32 H 1.08988 * 109.63179 * 95.21804 * 19 3 2 33 33 H 1.09003 * 109.62422 * 334.63567 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3490 1.9838 0.5391 5 6 2.1439 1.7916 -1.4559 6 6 3.1275 2.9680 -1.6050 7 6 2.9827 3.9828 -0.5034 8 6 3.9985 3.6480 0.6080 9 1 4.9397 3.3501 0.1459 10 6 4.2337 4.8811 1.4418 11 1 3.9704 4.8829 2.4893 12 6 4.7847 6.0069 0.8675 13 7 4.7031 7.1662 1.4831 14 14 5.6405 5.8871 -0.7886 15 1 6.1373 7.2284 -1.1873 16 1 6.7844 4.9455 -0.6876 17 1 4.6802 5.3919 -1.8073 18 6 3.5380 2.5735 1.4749 19 6 3.3348 1.2486 0.7119 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.4911 0.9627 -2.0727 24 1 1.1636 2.1077 -1.8122 25 1 4.1459 2.5796 -1.5950 26 1 2.9473 3.4593 -2.5611 27 1 1.9712 3.9426 -0.0992 28 1 3.1841 4.9797 -0.8953 29 1 4.1934 7.2443 2.3047 30 1 4.2735 2.4171 2.2642 31 1 2.5922 2.8677 1.9297 32 1 4.1360 1.1183 -0.0154 33 1 3.3366 0.4166 1.4160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:05 Heat of formation + Delta-G solvation = -70.024137 kcal Electronic energy + Delta-G solvation = -13451.015873 eV Core-core repulsion = 11282.911341 eV Total energy + Delta-G solvation = -2168.104532 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.04198 -36.57803 -32.89108 -31.62929 -30.47306 -26.56229 -25.34046 -23.65957 -22.23698 -19.34035 -18.94939 -17.46458 -16.41478 -15.28007 -15.07450 -14.13264 -13.69617 -13.49221 -13.29262 -12.93096 -12.34161 -12.01141 -11.61090 -11.50893 -11.24480 -10.81670 -10.70712 -10.25260 -10.18849 -9.84445 -9.72703 -9.56358 -9.27303 -9.14351 -8.65011 -8.23190 -6.37619 -4.00910 3.43992 3.47416 3.65737 4.00682 4.55757 5.05902 5.18578 5.29695 5.42138 5.44490 5.57875 5.68262 5.74082 5.85623 5.95831 6.04254 6.10190 6.19998 6.35097 6.49528 6.57611 6.67389 6.76651 6.93454 7.07830 7.17624 7.46349 7.52607 7.64363 8.23690 8.42838 8.95349 9.66977 10.99431 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055039 B = 0.010571 C = 0.009772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.610755 B = 2648.197166 C = 2864.615545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.094 3.906 4 H 0.058 0.942 5 C -0.132 4.132 6 C -0.117 4.117 7 C -0.121 4.121 8 C 0.013 3.987 9 H 0.019 0.981 10 C -0.598 4.598 11 H 0.053 0.947 12 C 0.030 3.970 13 N -0.912 5.912 14 Si 1.042 2.958 15 H -0.290 1.290 16 H -0.285 1.285 17 H -0.270 1.270 18 C -0.086 4.086 19 C -0.120 4.120 20 H 0.037 0.963 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.266 0.734 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -11.121 -5.185 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C 0.037 3.963 4 H 0.077 0.923 5 C -0.170 4.170 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.006 4.006 9 H 0.037 0.963 10 C -0.636 4.636 11 H 0.071 0.929 12 C -0.174 4.174 13 N -0.546 5.546 14 Si 0.870 3.130 15 H -0.216 1.216 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.124 4.124 19 C -0.157 4.157 20 H 0.056 0.944 21 H 0.097 0.903 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.009 -10.395 -6.289 13.142 hybrid contribution -1.185 -0.605 1.127 1.744 sum -6.194 -11.000 -5.162 13.639 Atomic orbital electron populations 1.22707 0.82124 1.01921 0.99778 1.87922 1.18906 1.29373 1.95140 1.22103 0.95586 0.83036 0.95557 0.92349 1.22362 0.99648 0.98444 0.96558 1.21415 0.98862 0.95739 0.99459 1.21865 1.00248 0.97928 0.95866 1.17983 0.93714 0.94985 0.93884 0.96293 1.22132 1.46402 0.97985 0.97052 0.92881 1.25776 0.95795 0.92009 1.03806 1.70844 1.40028 1.24703 1.19006 0.84138 0.76968 0.75593 0.76297 1.21583 1.21157 1.19600 1.20358 1.00829 0.92833 0.98341 1.21571 0.95434 0.99285 0.99418 0.94416 0.90297 0.94300 0.92047 0.93031 0.92340 0.93208 0.93447 0.91688 0.92403 0.92719 0.93360 0.91436 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.78 101.05 1.09 1.47 16 2 O -0.39 -6.21 10.19 -35.23 -0.36 -6.57 16 3 C 0.09 1.56 2.12 -27.43 -0.06 1.50 16 4 H 0.06 1.00 6.25 -51.93 -0.32 0.67 16 5 C -0.13 -2.10 5.35 -25.61 -0.14 -2.24 16 6 C -0.12 -2.11 5.29 -27.44 -0.15 -2.26 16 7 C -0.12 -2.60 4.18 -27.34 -0.11 -2.72 16 8 C 0.01 0.31 1.25 -94.64 -0.12 0.19 16 9 H 0.02 0.45 6.20 -51.93 -0.32 0.13 16 10 C -0.60 -16.83 8.76 -34.44 -0.30 -17.13 16 11 H 0.05 1.61 7.96 -52.48 -0.42 1.19 16 12 C 0.03 0.88 5.17 -17.82 -0.09 0.79 16 13 N -0.91 -28.27 13.70 55.43 0.76 -27.51 16 14 Si 1.04 25.36 26.07 -169.99 -4.43 20.93 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.27 -5.99 5.74 56.52 0.32 -5.66 16 18 C -0.09 -1.77 4.37 -29.60 -0.13 -1.90 16 19 C -0.12 -2.09 5.32 -27.34 -0.15 -2.24 16 20 H 0.04 0.42 8.06 -51.93 -0.42 0.01 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.45 8.07 -51.93 -0.42 0.03 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.06 1.06 6.63 -51.93 -0.34 0.71 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.99 6.98 -51.93 -0.36 0.63 16 28 H 0.06 1.51 4.80 -51.93 -0.25 1.26 16 29 H 0.27 8.22 8.73 -40.82 -0.36 7.87 16 30 H 0.05 1.14 8.10 -51.92 -0.42 0.72 16 31 H 0.05 1.00 7.47 -51.93 -0.39 0.61 16 32 H 0.07 1.17 6.97 -51.94 -0.36 0.81 16 33 H 0.06 1.06 7.98 -51.93 -0.41 0.65 16 LS Contribution 249.24 15.07 3.76 3.76 Total: -1.00 -29.91 249.24 -5.79 -35.70 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.36 Total: -1.78 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -0.15 Total: -24.52 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.76 Total: -27.51 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.36 Total: -6.57 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.43 Total: 20.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.91 -5.79 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.325 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds