Wall clock time and date at job start Mon Mar 30 2020 02:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42892 * 113.99899 * 2 1 4 4 H 1.08998 * 108.77481 * 31.49066 * 3 2 1 5 5 C 1.54072 * 108.87778 * 272.97329 * 3 2 1 6 6 C 1.54069 * 112.81507 * 197.50834 * 5 3 2 7 7 C 1.50473 * 112.49910 * 318.28774 * 6 5 3 8 8 C 1.54244 * 108.52587 * 94.15076 * 7 6 5 9 9 H 1.08999 * 108.81618 * 40.71739 * 8 7 6 10 10 C 1.50706 * 108.89448 * 159.25805 * 8 7 6 11 11 H 1.08004 * 119.99370 * 117.31734 * 10 8 7 12 12 C 1.37874 * 120.00112 * 297.32600 * 10 8 7 13 13 N 1.31517 * 119.99908 * 163.90443 * 12 10 8 14 14 Si 1.86799 * 120.00144 * 344.16962 * 12 10 8 15 15 H 1.48495 * 109.47388 * 179.73209 * 14 12 10 16 16 H 1.48501 * 109.47070 * 299.72812 * 14 12 10 17 17 H 1.48495 * 109.46927 * 59.73028 * 14 12 10 18 18 C 1.45538 * 112.40051 * 280.01381 * 8 7 6 19 19 C 1.50481 * 108.87695 * 150.00380 * 3 2 1 20 20 H 1.09005 * 109.46984 * 59.99799 * 1 2 3 21 21 H 1.09006 * 109.47463 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47016 * 300.00121 * 1 2 3 23 23 H 1.08992 * 108.81083 * 318.37112 * 5 3 2 24 24 H 1.08993 * 108.81012 * 76.75891 * 5 3 2 25 25 H 1.09003 * 108.87345 * 79.06711 * 6 5 3 26 26 H 1.08998 * 108.87538 * 197.60183 * 6 5 3 27 27 H 1.08995 * 109.63112 * 334.43441 * 7 6 5 28 28 H 1.09000 * 109.62199 * 213.85812 * 7 6 5 29 29 H 0.97003 * 119.99854 * 354.98754 * 13 12 10 30 30 H 1.09007 * 108.89084 * 182.69157 * 18 8 7 31 31 H 1.08996 * 108.89494 * 301.17728 * 18 8 7 32 32 H 1.08988 * 109.63179 * 95.21804 * 19 3 2 33 33 H 1.09003 * 109.62422 * 334.63567 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3490 1.9838 0.5391 5 6 2.1439 1.7916 -1.4559 6 6 3.1275 2.9680 -1.6050 7 6 2.9827 3.9828 -0.5034 8 6 3.9985 3.6480 0.6080 9 1 4.9397 3.3501 0.1459 10 6 4.2337 4.8811 1.4418 11 1 3.9704 4.8829 2.4893 12 6 4.7847 6.0069 0.8675 13 7 4.7031 7.1662 1.4831 14 14 5.6405 5.8871 -0.7886 15 1 6.1373 7.2284 -1.1873 16 1 6.7844 4.9455 -0.6876 17 1 4.6802 5.3919 -1.8073 18 6 3.5380 2.5735 1.4749 19 6 3.3348 1.2486 0.7119 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.4911 0.9627 -2.0727 24 1 1.1636 2.1077 -1.8122 25 1 4.1459 2.5796 -1.5950 26 1 2.9473 3.4593 -2.5611 27 1 1.9712 3.9426 -0.0992 28 1 3.1841 4.9797 -0.8953 29 1 4.1934 7.2443 2.3047 30 1 4.2735 2.4171 2.2642 31 1 2.5922 2.8677 1.9297 32 1 4.1360 1.1183 -0.0154 33 1 3.3366 0.4166 1.4160 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:05 Heat of formation + Delta-G solvation = -89.243416 kcal Electronic energy + Delta-G solvation = -13451.849283 eV Core-core repulsion = 11282.911341 eV Total energy + Delta-G solvation = -2168.937943 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.44516 -38.00483 -34.86265 -33.19965 -32.12862 -27.70416 -27.03677 -25.17133 -23.93876 -21.05090 -20.40992 -19.61504 -17.67146 -16.61855 -16.33489 -15.82876 -15.21351 -15.02704 -14.83433 -14.59627 -13.87104 -13.82974 -13.06851 -12.81208 -12.75190 -12.36894 -12.11929 -11.99046 -11.76899 -11.60361 -11.35391 -11.12108 -11.03761 -10.67371 -10.43978 -10.38102 -8.69524 -6.33693 1.48649 1.55071 1.74502 2.53155 2.86425 3.07102 3.73703 3.89574 4.22991 4.29256 4.37828 4.41930 4.54107 4.56041 4.60321 4.62804 4.66373 4.83866 4.99193 5.03113 5.10919 5.17224 5.26569 5.38117 5.43115 5.53289 5.67825 5.85064 6.05855 6.19849 6.32192 6.60909 7.43807 8.66160 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.055039 B = 0.010571 C = 0.009772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.610755 B = 2648.197166 C = 2864.615545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.095 3.905 4 H 0.048 0.952 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.117 4.117 8 C 0.015 3.985 9 H 0.023 0.977 10 C -0.604 4.604 11 H 0.012 0.988 12 C -0.022 4.022 13 N -0.946 5.946 14 Si 1.079 2.921 15 H -0.296 1.296 16 H -0.267 1.267 17 H -0.231 1.231 18 C -0.084 4.084 19 C -0.109 4.109 20 H 0.048 0.952 21 H 0.102 0.898 22 H 0.040 0.960 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.250 0.750 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 -13.194 -7.558 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.038 3.962 4 H 0.066 0.934 5 C -0.164 4.164 6 C -0.153 4.153 7 C -0.154 4.154 8 C -0.004 4.004 9 H 0.041 0.959 10 C -0.642 4.642 11 H 0.030 0.970 12 C -0.218 4.218 13 N -0.582 5.582 14 Si 0.900 3.100 15 H -0.223 1.223 16 H -0.192 1.192 17 H -0.155 1.155 18 C -0.122 4.122 19 C -0.147 4.147 20 H 0.066 0.934 21 H 0.120 0.880 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.474 -12.502 -8.649 16.158 hybrid contribution -1.109 0.025 2.009 2.295 sum -6.583 -12.476 -6.641 15.592 Atomic orbital electron populations 1.22948 0.80227 1.03707 1.00374 1.87888 1.20940 1.28476 1.95253 1.21961 0.94778 0.83532 0.95922 0.93392 1.22294 0.99926 0.97996 0.96163 1.21356 0.99792 0.95576 0.98572 1.21703 0.99281 0.98174 0.96281 1.18001 0.94776 0.93410 0.94213 0.95887 1.22456 1.45527 1.00352 0.95860 0.97000 1.27256 0.96117 0.91412 1.07064 1.70976 1.41773 1.26244 1.19215 0.83712 0.77322 0.75902 0.73097 1.22268 1.19242 1.15505 1.20246 0.99774 0.94120 0.98013 1.21426 0.96571 0.97184 0.99505 0.93367 0.88003 0.94179 0.90459 0.91573 0.92059 0.91332 0.93543 0.93606 0.94151 0.93915 0.94441 0.90726 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.78 113.37 1.22 1.72 16 2 O -0.41 -11.45 10.19 -148.98 -1.52 -12.97 16 3 C 0.10 2.88 2.12 30.14 0.06 2.94 16 4 H 0.05 1.54 6.25 -2.39 -0.01 1.53 16 5 C -0.13 -3.49 5.35 31.32 0.17 -3.32 16 6 C -0.12 -3.70 5.29 30.14 0.16 -3.54 16 7 C -0.12 -4.77 4.18 30.20 0.13 -4.64 16 8 C 0.01 0.68 1.25 -13.40 -0.02 0.67 16 9 H 0.02 1.05 6.20 -2.39 -0.01 1.04 16 10 C -0.60 -34.88 8.76 25.60 0.22 -34.66 16 11 H 0.01 0.75 7.96 -2.91 -0.02 0.72 16 12 C -0.02 -1.27 5.17 84.65 0.44 -0.83 16 13 N -0.95 -60.60 13.70 21.45 0.29 -60.31 16 14 Si 1.08 50.14 26.07 68.60 1.79 51.93 16 15 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.23 -9.29 5.74 99.48 0.57 -8.72 16 18 C -0.08 -3.41 4.37 28.73 0.13 -3.29 16 19 C -0.11 -3.57 5.32 30.20 0.16 -3.41 16 20 H 0.05 0.91 8.06 -2.38 -0.02 0.89 16 21 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 22 H 0.04 0.83 8.07 -2.39 -0.02 0.81 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 25 H 0.06 1.95 6.63 -2.39 -0.02 1.93 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.05 1.87 6.98 -2.39 -0.02 1.86 16 28 H 0.05 2.04 4.80 -2.39 -0.01 2.02 16 29 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 30 H 0.04 1.79 8.10 -2.38 -0.02 1.77 16 31 H 0.04 1.57 7.47 -2.39 -0.02 1.55 16 32 H 0.07 2.35 6.97 -2.39 -0.02 2.33 16 33 H 0.07 2.29 7.98 -2.39 -0.02 2.27 16 Total: -1.00 -65.45 249.24 4.13 -61.32 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.89 Total: 8.40 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 2.67 Total: -48.37 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.29 Total: -60.31 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -1.52 Total: -12.97 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 1.79 Total: 51.93 kcal Total: -65.45 4.13 -61.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.920 kcal (2) G-P(sol) polarization free energy of solvation -65.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds