Wall clock time and date at job start Mon Mar 30 2020 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99433 * 2 1 4 4 H 1.08999 * 109.78874 * 330.48377 * 3 2 1 5 5 C 1.50476 * 109.62797 * 90.96494 * 3 2 1 6 6 C 1.54061 * 112.50196 * 213.85783 * 5 3 2 7 7 C 1.54076 * 112.81691 * 318.28597 * 6 5 3 8 8 C 1.50473 * 112.49469 * 318.28258 * 7 6 5 9 9 H 1.09004 * 109.78548 * 334.34705 * 8 7 6 10 10 C 1.50693 * 109.62820 * 213.86526 * 8 7 6 11 11 H 1.08006 * 119.99969 * 240.97291 * 10 8 7 12 12 C 1.37881 * 120.00435 * 60.96896 * 10 8 7 13 13 N 1.31513 * 119.99719 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00216 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47214 * 59.99930 * 14 12 10 16 16 H 1.48499 * 109.46946 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46790 * 299.99737 * 14 12 10 18 18 C 1.54236 * 108.51943 * 94.15360 * 8 7 6 19 19 C 1.45546 * 112.40892 * 280.00286 * 18 8 7 20 20 H 1.08995 * 109.47560 * 299.99737 * 1 2 3 21 21 H 1.09001 * 109.47386 * 60.00694 * 1 2 3 22 22 H 1.09011 * 109.46614 * 179.97438 * 1 2 3 23 23 H 1.09003 * 108.87444 * 93.07917 * 5 3 2 24 24 H 1.09003 * 108.79827 * 334.58677 * 5 3 2 25 25 H 1.08997 * 108.81642 * 197.42430 * 6 5 3 26 26 H 1.09001 * 108.72518 * 79.08334 * 6 5 3 27 27 H 1.08998 * 108.87551 * 197.50492 * 7 6 5 28 28 H 1.09003 * 108.87551 * 79.06185 * 7 6 5 29 29 H 0.96995 * 120.00111 * 180.02562 * 13 12 10 30 30 H 1.09003 * 108.89060 * 159.25456 * 18 8 7 31 31 H 1.08995 * 108.81903 * 40.70758 * 18 8 7 32 32 H 1.08995 * 108.89611 * 182.69184 * 19 18 8 33 33 H 1.08994 * 108.89692 * 301.18848 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3447 2.0056 -0.5053 5 6 2.2374 1.7576 1.4171 6 6 2.0488 3.2769 1.5888 7 6 2.6642 4.0897 0.4336 8 6 4.0076 3.5609 0.0094 9 1 4.4772 3.0364 0.8416 10 6 4.8862 4.7041 -0.4288 11 1 5.2625 4.7389 -1.4406 12 6 5.2098 5.7057 0.4618 13 7 4.7520 5.6631 1.6939 14 14 6.2984 7.1231 -0.0817 15 1 5.6505 7.8408 -1.2088 16 1 6.4956 8.0593 1.0540 17 1 7.6148 6.5955 -0.5220 18 6 3.8008 2.5857 -1.1675 19 6 3.3703 1.2672 -0.7264 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 3.2524 1.4926 1.7133 24 1 1.5338 1.2390 2.0684 25 1 2.5160 3.5858 2.5238 26 1 0.9817 3.4933 1.6413 27 1 2.7777 5.1257 0.7527 28 1 1.9870 4.0578 -0.4200 29 1 4.9793 6.3678 2.3204 30 1 4.7395 2.4864 -1.7126 31 1 3.0460 2.9977 -1.8372 32 1 3.2884 0.6137 -1.5948 33 1 4.1206 0.8590 -0.0493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:06 Heat of formation + Delta-G solvation = -70.465388 kcal Electronic energy + Delta-G solvation = -13411.207229 eV Core-core repulsion = 11243.083562 eV Total energy + Delta-G solvation = -2168.123666 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.83489 -36.22286 -32.75786 -31.60788 -29.87582 -26.49598 -25.39261 -23.16570 -22.53075 -19.75676 -18.42548 -16.48319 -15.97364 -14.99698 -14.88854 -14.44612 -13.69045 -13.41090 -12.95558 -12.52432 -12.07994 -11.86329 -11.45638 -11.26902 -11.02261 -10.77889 -10.56627 -10.42255 -10.13370 -9.92707 -9.55600 -9.30820 -9.02136 -8.88249 -8.72130 -8.20736 -5.94304 -3.99913 3.34161 3.38837 3.41552 4.11991 4.47410 5.26535 5.35812 5.44497 5.55487 5.57444 5.77631 5.83568 6.04756 6.08539 6.17690 6.22517 6.39606 6.61477 6.71071 6.82778 6.88342 6.92779 7.03240 7.16623 7.31170 7.59042 7.68031 7.81007 8.07702 8.15948 8.55219 9.05408 9.63971 11.11784 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068131 B = 0.009326 C = 0.008625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.871738 B = 3001.602960 C = 3245.516199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.093 3.907 4 H 0.061 0.939 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.099 4.099 8 C 0.051 3.949 9 H 0.030 0.970 10 C -0.513 4.513 11 H 0.053 0.947 12 C 0.060 3.940 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.114 4.114 19 C -0.103 4.103 20 H 0.038 0.962 21 H 0.037 0.963 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.019 0.981 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 -6.633 -1.821 9.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C 0.036 3.964 4 H 0.079 0.921 5 C -0.172 4.172 6 C -0.145 4.145 7 C -0.136 4.136 8 C 0.033 3.967 9 H 0.048 0.952 10 C -0.552 4.552 11 H 0.071 0.929 12 C -0.141 4.141 13 N -0.526 5.526 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.152 4.152 19 C -0.140 4.140 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.420 -6.691 -1.645 9.418 hybrid contribution 0.341 1.079 -0.153 1.142 sum -6.079 -5.612 -1.799 8.466 Atomic orbital electron populations 1.22683 0.82167 1.01763 0.99742 1.87864 1.18782 1.29433 1.95191 1.21961 0.95219 0.82798 0.96426 0.92101 1.21839 1.02132 0.97311 0.95945 1.21845 0.98330 0.92861 1.01441 1.21375 0.96422 1.01780 0.94071 1.18444 0.92910 0.92886 0.92441 0.95178 1.21272 1.29667 1.06854 0.97383 0.92890 1.24959 0.96136 0.98041 0.94993 1.69948 1.44936 1.33706 1.04057 0.86735 0.81261 0.82408 0.78030 1.20404 1.21396 1.20375 1.20591 0.99783 0.94499 1.00329 1.20531 0.94814 0.99117 0.99560 0.94368 0.94461 0.90379 0.91548 0.93219 0.91953 0.94872 0.89984 0.96233 0.93127 0.92763 0.93879 0.93078 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.76 101.05 1.09 1.52 16 2 O -0.39 -6.67 10.25 -35.23 -0.36 -7.03 16 3 C 0.09 1.67 2.28 -27.34 -0.06 1.61 16 4 H 0.06 1.10 6.63 -51.93 -0.34 0.75 16 5 C -0.13 -2.51 5.05 -27.44 -0.14 -2.65 16 6 C -0.11 -2.19 5.86 -25.62 -0.15 -2.34 16 7 C -0.10 -2.30 4.50 -27.43 -0.12 -2.43 16 8 C 0.05 1.27 1.76 -92.39 -0.16 1.11 16 9 H 0.03 0.81 7.00 -51.93 -0.36 0.45 16 10 C -0.51 -14.07 8.43 -34.44 -0.29 -14.36 16 11 H 0.05 1.44 7.71 -52.48 -0.40 1.03 16 12 C 0.06 1.65 5.03 -17.82 -0.09 1.56 16 13 N -0.89 -25.18 11.71 55.43 0.65 -24.53 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C -0.11 -2.40 4.64 -29.60 -0.14 -2.54 16 19 C -0.10 -1.92 4.94 -29.59 -0.15 -2.07 16 20 H 0.04 0.47 7.95 -51.93 -0.41 0.06 16 21 H 0.04 0.45 8.09 -51.93 -0.42 0.03 16 22 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 23 H 0.07 1.32 6.64 -51.93 -0.34 0.97 16 24 H 0.05 0.85 7.71 -51.93 -0.40 0.45 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 2.17 5.99 -51.93 -0.31 1.86 16 28 H 0.02 0.42 6.63 -51.93 -0.34 0.08 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 31 H 0.04 0.88 7.46 -51.93 -0.39 0.49 16 32 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.06 1.15 7.47 -51.93 -0.39 0.77 16 LS Contribution 254.16 15.07 3.83 3.83 Total: -1.00 -28.10 254.16 -6.48 -34.58 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.36 Total: -2.52 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -0.21 Total: -20.59 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.65 Total: -24.53 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.36 Total: -7.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.10 -6.48 -34.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.887 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds