Wall clock time and date at job start Mon Mar 30 2020 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99433 * 2 1 4 4 H 1.08999 * 109.78874 * 330.48377 * 3 2 1 5 5 C 1.50476 * 109.62797 * 90.96494 * 3 2 1 6 6 C 1.54061 * 112.50196 * 213.85783 * 5 3 2 7 7 C 1.54076 * 112.81691 * 318.28597 * 6 5 3 8 8 C 1.50473 * 112.49469 * 318.28258 * 7 6 5 9 9 H 1.09004 * 109.78548 * 334.34705 * 8 7 6 10 10 C 1.50693 * 109.62820 * 213.86526 * 8 7 6 11 11 H 1.08006 * 119.99969 * 240.97291 * 10 8 7 12 12 C 1.37881 * 120.00435 * 60.96896 * 10 8 7 13 13 N 1.31513 * 119.99719 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00216 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47214 * 59.99930 * 14 12 10 16 16 H 1.48499 * 109.46946 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46790 * 299.99737 * 14 12 10 18 18 C 1.54236 * 108.51943 * 94.15360 * 8 7 6 19 19 C 1.45546 * 112.40892 * 280.00286 * 18 8 7 20 20 H 1.08995 * 109.47560 * 299.99737 * 1 2 3 21 21 H 1.09001 * 109.47386 * 60.00694 * 1 2 3 22 22 H 1.09011 * 109.46614 * 179.97438 * 1 2 3 23 23 H 1.09003 * 108.87444 * 93.07917 * 5 3 2 24 24 H 1.09003 * 108.79827 * 334.58677 * 5 3 2 25 25 H 1.08997 * 108.81642 * 197.42430 * 6 5 3 26 26 H 1.09001 * 108.72518 * 79.08334 * 6 5 3 27 27 H 1.08998 * 108.87551 * 197.50492 * 7 6 5 28 28 H 1.09003 * 108.87551 * 79.06185 * 7 6 5 29 29 H 0.96995 * 120.00111 * 180.02562 * 13 12 10 30 30 H 1.09003 * 108.89060 * 159.25456 * 18 8 7 31 31 H 1.08995 * 108.81903 * 40.70758 * 18 8 7 32 32 H 1.08995 * 108.89611 * 182.69184 * 19 18 8 33 33 H 1.08994 * 108.89692 * 301.18848 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3447 2.0056 -0.5053 5 6 2.2374 1.7576 1.4171 6 6 2.0488 3.2769 1.5888 7 6 2.6642 4.0897 0.4336 8 6 4.0076 3.5609 0.0094 9 1 4.4772 3.0364 0.8416 10 6 4.8862 4.7041 -0.4288 11 1 5.2625 4.7389 -1.4406 12 6 5.2098 5.7057 0.4618 13 7 4.7520 5.6631 1.6939 14 14 6.2984 7.1231 -0.0817 15 1 5.6505 7.8408 -1.2088 16 1 6.4956 8.0593 1.0540 17 1 7.6148 6.5955 -0.5220 18 6 3.8008 2.5857 -1.1675 19 6 3.3703 1.2672 -0.7264 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 3.2524 1.4926 1.7133 24 1 1.5338 1.2390 2.0684 25 1 2.5160 3.5858 2.5238 26 1 0.9817 3.4933 1.6413 27 1 2.7777 5.1257 0.7527 28 1 1.9870 4.0578 -0.4200 29 1 4.9793 6.3678 2.3204 30 1 4.7395 2.4864 -1.7126 31 1 3.0460 2.9977 -1.8372 32 1 3.2884 0.6137 -1.5948 33 1 4.1206 0.8590 -0.0493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011670.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:06 Heat of formation + Delta-G solvation = -86.553168 kcal Electronic energy + Delta-G solvation = -13411.904847 eV Core-core repulsion = 11243.083562 eV Total energy + Delta-G solvation = -2168.821285 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.33550 -37.74572 -34.69277 -33.25138 -31.64155 -27.81146 -27.13958 -24.73578 -24.34172 -21.35079 -20.19965 -18.35512 -17.50748 -16.69111 -16.25413 -16.00877 -15.26757 -14.97207 -14.70333 -14.14727 -13.74209 -13.49610 -13.10997 -12.88507 -12.63411 -12.54840 -12.34744 -12.19168 -11.65809 -11.56211 -11.21096 -11.11212 -10.75534 -10.69812 -10.40507 -10.24023 -8.04956 -6.17555 1.42945 1.43577 1.51028 2.46020 2.87359 3.22880 3.82165 3.96498 4.30738 4.42501 4.47494 4.55368 4.57481 4.62489 4.65553 4.80898 4.86901 4.92631 5.04160 5.19299 5.27637 5.31729 5.40805 5.44045 5.53677 5.69869 5.77182 6.07984 6.21106 6.37759 6.48878 6.96982 7.49628 8.99719 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.068131 B = 0.009326 C = 0.008625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.871738 B = 3001.602960 C = 3245.516199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.101 3.899 4 H 0.064 0.936 5 C -0.127 4.127 6 C -0.100 4.100 7 C -0.093 4.093 8 C 0.049 3.951 9 H -0.001 1.001 10 C -0.537 4.537 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.948 3.052 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.104 4.104 19 C -0.102 4.102 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.102 0.898 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.258 0.742 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 -7.231 -2.607 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.044 3.956 4 H 0.082 0.918 5 C -0.165 4.165 6 C -0.138 4.138 7 C -0.131 4.131 8 C 0.030 3.970 9 H 0.017 0.983 10 C -0.575 4.575 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.551 5.551 14 Si 0.775 3.225 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.141 4.141 19 C -0.139 4.139 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.121 0.879 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.363 -7.298 -2.440 10.651 hybrid contribution 0.601 1.235 0.096 1.377 sum -6.762 -6.064 -2.344 9.380 Atomic orbital electron populations 1.22967 0.79957 1.03749 1.00556 1.87842 1.21157 1.28341 1.95228 1.21735 0.94852 0.83656 0.95374 0.91750 1.21755 1.01609 0.95864 0.97294 1.21720 0.99201 0.93876 0.98972 1.21213 0.96256 1.00105 0.95477 1.18405 0.92957 0.92788 0.92802 0.98259 1.21674 1.30395 1.08010 0.97391 0.93156 1.25690 0.97410 1.00437 0.95082 1.70078 1.45811 1.34343 1.04885 0.85764 0.79589 0.79457 0.77734 1.19710 1.21109 1.19915 1.20435 0.99958 0.94920 0.98801 1.20450 0.95307 0.97857 1.00312 0.93759 0.93423 0.87925 0.93401 0.91234 0.94269 0.92463 0.93552 0.94931 0.93259 0.93203 0.93130 0.91067 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.76 113.37 1.22 1.75 16 2 O -0.41 -12.58 10.25 -148.98 -1.53 -14.11 16 3 C 0.10 3.42 2.28 30.20 0.07 3.49 16 4 H 0.06 2.14 6.63 -2.39 -0.02 2.12 16 5 C -0.13 -4.60 5.05 30.14 0.15 -4.45 16 6 C -0.10 -4.04 5.86 31.32 0.18 -3.85 16 7 C -0.09 -4.34 4.50 30.14 0.14 -4.20 16 8 C 0.05 2.44 1.76 -11.94 -0.02 2.42 16 9 H 0.00 -0.04 7.00 -2.38 -0.02 -0.06 16 10 C -0.54 -29.77 8.43 25.60 0.22 -29.55 16 11 H 0.05 2.74 7.71 -2.91 -0.02 2.72 16 12 C 0.01 0.70 5.03 84.66 0.43 1.12 16 13 N -0.91 -52.79 11.71 21.45 0.25 -52.53 16 14 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 C -0.10 -4.28 4.64 28.74 0.13 -4.14 16 19 C -0.10 -3.66 4.94 28.74 0.14 -3.52 16 20 H 0.04 0.94 7.95 -2.39 -0.02 0.93 16 21 H 0.05 0.98 8.09 -2.39 -0.02 0.96 16 22 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.05 1.89 6.64 -2.39 -0.02 1.88 16 24 H 0.07 2.22 7.71 -2.39 -0.02 2.20 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 2.50 5.99 -2.39 -0.01 2.48 16 28 H 0.03 1.40 6.63 -2.39 -0.02 1.38 16 29 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 31 H 0.05 1.99 7.46 -2.39 -0.02 1.97 16 32 H 0.07 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.05 1.95 7.47 -2.39 -0.02 1.93 16 Total: -1.00 -59.73 254.16 4.47 -55.26 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.06 Total: 6.41 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 2.66 Total: -40.94 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.25 Total: -52.53 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.53 Total: -14.11 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -59.73 4.47 -55.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011670.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.293 kcal (2) G-P(sol) polarization free energy of solvation -59.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds