Wall clock time and date at job start Mon Mar 30 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00299 * 2 1 4 4 H 1.09008 * 108.85331 * 328.55661 * 3 2 1 5 5 C 1.50473 * 108.87809 * 87.01729 * 3 2 1 6 6 C 1.54244 * 108.51694 * 214.92878 * 5 3 2 7 7 C 1.45542 * 112.40888 * 280.01237 * 6 5 3 8 8 C 1.54239 * 112.40362 * 61.93799 * 7 6 5 9 9 H 1.08998 * 109.79462 * 39.82087 * 8 7 6 10 10 C 1.50706 * 109.62828 * 160.30627 * 8 7 6 11 11 H 1.07995 * 120.00167 * 118.75222 * 10 8 7 12 12 C 1.37879 * 119.99394 * 299.02920 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.50478 * 108.52554 * 280.01411 * 8 7 6 19 19 C 1.54059 * 108.87746 * 210.00041 * 3 2 1 20 20 H 1.08999 * 109.47108 * 300.00697 * 1 2 3 21 21 H 1.09005 * 109.46690 * 60.00108 * 1 2 3 22 22 H 1.08993 * 109.47623 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.63106 * 334.64110 * 5 3 2 24 24 H 1.08998 * 109.62750 * 95.02697 * 5 3 2 25 25 H 1.09000 * 108.89161 * 40.76721 * 6 5 3 26 26 H 1.09003 * 108.89228 * 159.35676 * 6 5 3 27 27 H 1.09001 * 108.89409 * 301.18396 * 7 6 5 28 28 H 1.09000 * 108.89497 * 182.69188 * 7 6 5 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.08996 * 108.87859 * 214.93112 * 18 8 7 31 31 H 1.09000 * 108.87588 * 333.47341 * 18 8 7 32 32 H 1.09001 * 108.81574 * 76.64043 * 19 3 2 33 33 H 1.09003 * 108.72355 * 318.30073 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3496 1.9852 -0.5381 5 6 2.1407 1.7803 1.4219 6 6 1.8992 3.3034 1.4537 7 6 3.0734 4.0600 1.0451 8 6 3.4924 3.7557 -0.4078 9 1 2.6064 3.6616 -1.0355 10 6 4.3645 4.8698 -0.9270 11 1 5.3792 4.6631 -1.2335 12 6 3.8686 6.1539 -1.0054 13 7 2.6348 6.4067 -0.6266 14 14 4.9493 7.5347 -1.6496 15 1 5.3693 7.2269 -3.0402 16 1 4.1868 8.8089 -1.6329 17 1 6.1510 7.6662 -0.7872 18 6 4.2620 2.4627 -0.4226 19 6 3.3663 1.2472 -0.7289 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.4000 1.2790 2.0447 24 1 3.1414 1.5575 1.7920 25 1 1.0735 3.5439 0.7839 26 1 1.6274 3.5965 2.4678 27 1 3.9011 3.8137 1.7102 28 1 2.8560 5.1244 1.1342 29 1 2.2861 7.3101 -0.6814 30 1 5.0426 2.5256 -1.1807 31 1 4.7283 2.3187 0.5520 32 1 3.1865 1.2049 -1.8031 33 1 3.8886 0.3402 -0.4244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:09 Heat of formation + Delta-G solvation = -70.551386 kcal Electronic energy + Delta-G solvation = -13415.465517 eV Core-core repulsion = 11247.338122 eV Total energy + Delta-G solvation = -2168.127395 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.81607 -36.26614 -32.73668 -31.52137 -29.93226 -26.38913 -25.52232 -23.34937 -22.38512 -19.61048 -18.48518 -16.75209 -15.67536 -15.20254 -14.88688 -14.46281 -13.42502 -13.31504 -12.89216 -12.71488 -12.18504 -11.77116 -11.50401 -11.40949 -10.94097 -10.84205 -10.51252 -10.43249 -10.09486 -9.91572 -9.56451 -9.21931 -9.10274 -8.94522 -8.70291 -8.23843 -5.95269 -4.01037 3.33516 3.38094 3.40937 4.15155 4.46474 5.27076 5.36890 5.47652 5.59768 5.60911 5.79756 5.82422 5.99727 6.14977 6.17833 6.21204 6.31746 6.49458 6.57294 6.76696 6.89806 6.93661 7.09108 7.32378 7.37721 7.56416 7.65743 7.79690 8.06638 8.17557 8.53024 9.03583 9.63087 11.10465 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057504 B = 0.009480 C = 0.009040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.808879 B = 2952.786308 C = 3096.690470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.398 6.398 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.137 4.137 6 C -0.102 4.102 7 C -0.117 4.117 8 C 0.050 3.950 9 H 0.027 0.973 10 C -0.511 4.511 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.889 5.889 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.103 4.103 19 C -0.108 4.108 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.088 0.912 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 -7.877 2.211 8.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.318 6.318 3 C 0.037 3.963 4 H 0.078 0.922 5 C -0.174 4.174 6 C -0.139 4.139 7 C -0.155 4.155 8 C 0.032 3.968 9 H 0.045 0.955 10 C -0.549 4.549 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.141 4.141 19 C -0.145 4.145 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.901 -7.884 2.222 8.690 hybrid contribution 0.280 1.075 -0.293 1.149 sum -2.621 -6.809 1.929 7.547 Atomic orbital electron populations 1.22684 0.82126 1.01680 0.99895 1.87855 1.18865 1.29790 1.95255 1.22079 0.95508 0.82776 0.95945 0.92205 1.21906 1.01864 0.97300 0.96362 1.20452 1.00730 0.93055 0.99712 1.20521 0.94464 1.02451 0.98083 1.18410 0.95346 0.90478 0.92584 0.95506 1.21320 0.98817 0.92941 1.41854 0.92819 1.24977 0.94999 0.98635 0.95493 1.69905 1.14643 1.20523 1.47726 0.86730 0.80635 0.81537 0.79509 1.20359 1.21379 1.20360 1.21501 0.97783 0.94676 1.00128 1.21941 0.94130 0.99242 0.99220 0.94342 0.94330 0.90451 0.92721 0.91543 0.92834 0.94241 0.95609 0.89376 0.93105 0.92715 0.93741 0.92610 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 101.05 1.08 1.53 16 2 O -0.40 -6.85 10.22 -35.23 -0.36 -7.21 16 3 C 0.09 1.72 2.13 -27.44 -0.06 1.66 16 4 H 0.06 1.16 6.25 -51.92 -0.32 0.84 16 5 C -0.14 -2.45 5.24 -27.34 -0.14 -2.59 16 6 C -0.10 -2.04 5.26 -29.60 -0.16 -2.20 16 7 C -0.12 -2.75 4.51 -29.60 -0.13 -2.88 16 8 C 0.05 1.24 1.75 -92.38 -0.16 1.07 16 9 H 0.03 0.72 6.99 -51.93 -0.36 0.35 16 10 C -0.51 -14.01 8.44 -34.44 -0.29 -14.30 16 11 H 0.05 1.45 7.46 -52.49 -0.39 1.06 16 12 C 0.06 1.65 5.18 -17.82 -0.09 1.56 16 13 N -0.89 -25.26 11.47 55.43 0.64 -24.62 16 14 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.10 -2.18 4.88 -27.44 -0.13 -2.31 16 19 C -0.11 -2.02 5.49 -25.62 -0.14 -2.16 16 20 H 0.04 0.49 7.61 -51.93 -0.40 0.10 16 21 H 0.04 0.50 8.07 -51.93 -0.42 0.08 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.89 7.37 -51.93 -0.38 0.51 16 24 H 0.07 1.20 6.99 -51.93 -0.36 0.84 16 25 H 0.05 1.12 7.47 -51.93 -0.39 0.73 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.58 7.47 -51.93 -0.39 0.19 16 28 H 0.09 2.34 5.90 -51.93 -0.31 2.03 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 1.16 7.48 -51.93 -0.39 0.77 16 31 H 0.04 0.91 6.63 -51.93 -0.34 0.56 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 252.70 15.07 3.81 3.81 Total: -1.00 -28.13 252.70 -6.45 -34.57 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.28 Total: -2.18 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -0.23 Total: -20.63 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.64 Total: -24.62 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.36 Total: -7.21 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.13 -6.45 -34.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds