Wall clock time and date at job start Mon Mar 30 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00299 * 2 1 4 4 H 1.09008 * 108.85331 * 328.55661 * 3 2 1 5 5 C 1.50473 * 108.87809 * 87.01729 * 3 2 1 6 6 C 1.54244 * 108.51694 * 214.92878 * 5 3 2 7 7 C 1.45542 * 112.40888 * 280.01237 * 6 5 3 8 8 C 1.54239 * 112.40362 * 61.93799 * 7 6 5 9 9 H 1.08998 * 109.79462 * 39.82087 * 8 7 6 10 10 C 1.50706 * 109.62828 * 160.30627 * 8 7 6 11 11 H 1.07995 * 120.00167 * 118.75222 * 10 8 7 12 12 C 1.37879 * 119.99394 * 299.02920 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48490 * 109.47405 * 60.00219 * 14 12 10 16 16 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 18 18 C 1.50478 * 108.52554 * 280.01411 * 8 7 6 19 19 C 1.54059 * 108.87746 * 210.00041 * 3 2 1 20 20 H 1.08999 * 109.47108 * 300.00697 * 1 2 3 21 21 H 1.09005 * 109.46690 * 60.00108 * 1 2 3 22 22 H 1.08993 * 109.47623 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.63106 * 334.64110 * 5 3 2 24 24 H 1.08998 * 109.62750 * 95.02697 * 5 3 2 25 25 H 1.09000 * 108.89161 * 40.76721 * 6 5 3 26 26 H 1.09003 * 108.89228 * 159.35676 * 6 5 3 27 27 H 1.09001 * 108.89409 * 301.18396 * 7 6 5 28 28 H 1.09000 * 108.89497 * 182.69188 * 7 6 5 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.08996 * 108.87859 * 214.93112 * 18 8 7 31 31 H 1.09000 * 108.87588 * 333.47341 * 18 8 7 32 32 H 1.09001 * 108.81574 * 76.64043 * 19 3 2 33 33 H 1.09003 * 108.72355 * 318.30073 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3496 1.9852 -0.5381 5 6 2.1407 1.7803 1.4219 6 6 1.8992 3.3034 1.4537 7 6 3.0734 4.0600 1.0451 8 6 3.4924 3.7557 -0.4078 9 1 2.6064 3.6616 -1.0355 10 6 4.3645 4.8698 -0.9270 11 1 5.3792 4.6631 -1.2335 12 6 3.8686 6.1539 -1.0054 13 7 2.6348 6.4067 -0.6266 14 14 4.9493 7.5347 -1.6496 15 1 5.3693 7.2269 -3.0402 16 1 4.1868 8.8089 -1.6329 17 1 6.1510 7.6662 -0.7872 18 6 4.2620 2.4627 -0.4226 19 6 3.3663 1.2472 -0.7289 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.4000 1.2790 2.0447 24 1 3.1414 1.5575 1.7920 25 1 1.0735 3.5439 0.7839 26 1 1.6274 3.5965 2.4678 27 1 3.9011 3.8137 1.7102 28 1 2.8560 5.1244 1.1342 29 1 2.2861 7.3101 -0.6814 30 1 5.0426 2.5256 -1.1807 31 1 4.7283 2.3187 0.5520 32 1 3.1865 1.2049 -1.8031 33 1 3.8886 0.3402 -0.4244 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:09 Heat of formation + Delta-G solvation = -86.623763 kcal Electronic energy + Delta-G solvation = -13416.162468 eV Core-core repulsion = 11247.338122 eV Total energy + Delta-G solvation = -2168.824346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33074 -37.81876 -34.68150 -33.16892 -31.67318 -27.71520 -27.29073 -24.98206 -24.12806 -21.29720 -20.16308 -18.62818 -17.26893 -16.73983 -16.30776 -16.25670 -14.94802 -14.86628 -14.61698 -14.34326 -13.91144 -13.48208 -13.04590 -12.94756 -12.72894 -12.54089 -12.20750 -12.18049 -11.65670 -11.55623 -11.37948 -10.96488 -10.84720 -10.68689 -10.39879 -10.30048 -8.05844 -6.18746 1.42491 1.43112 1.50599 2.45207 2.85893 3.20580 3.82462 4.01131 4.27382 4.43418 4.48696 4.52105 4.56062 4.62987 4.69509 4.73367 4.82301 4.86641 5.06230 5.17295 5.24670 5.29916 5.39496 5.54418 5.62247 5.67496 5.73444 6.08004 6.22251 6.34238 6.46755 6.94554 7.48703 8.98351 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057504 B = 0.009480 C = 0.009040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.808879 B = 2952.786308 C = 3096.690470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.098 3.902 4 H 0.041 0.959 5 C -0.126 4.126 6 C -0.098 4.098 7 C -0.108 4.108 8 C 0.049 3.951 9 H -0.002 1.002 10 C -0.535 4.535 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.913 5.913 14 Si 0.949 3.051 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.097 4.097 19 C -0.104 4.104 20 H 0.045 0.955 21 H 0.038 0.962 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.259 0.741 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -8.851 2.637 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.041 3.959 4 H 0.059 0.941 5 C -0.164 4.164 6 C -0.135 4.135 7 C -0.146 4.146 8 C 0.031 3.969 9 H 0.016 0.984 10 C -0.573 4.573 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.553 5.553 14 Si 0.775 3.225 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.135 4.135 19 C -0.141 4.141 20 H 0.064 0.936 21 H 0.057 0.943 22 H 0.124 0.876 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.732 -8.870 2.648 9.652 hybrid contribution 0.187 1.362 -0.435 1.442 sum -2.546 -7.509 2.213 8.231 Atomic orbital electron populations 1.22941 0.80184 1.03711 1.00313 1.87826 1.20943 1.28621 1.95321 1.21898 0.94939 0.83231 0.95836 0.94059 1.21804 1.02740 0.95324 0.96539 1.20337 0.98540 0.94570 1.00095 1.20373 0.95988 1.00809 0.97454 1.18365 0.94224 0.91697 0.92643 0.98399 1.21731 0.99160 0.94206 1.42205 0.93063 1.25715 0.96220 1.00938 0.95765 1.70039 1.15987 1.20874 1.48390 0.85756 0.79062 0.78659 0.79041 1.19839 1.21051 1.19721 1.21347 0.97685 0.93985 1.00435 1.21854 0.94325 0.98625 0.99344 0.93597 0.94301 0.87638 0.90519 0.91211 0.94359 0.92564 0.95168 0.92892 0.93203 0.93246 0.92929 0.92787 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.70 113.37 1.21 1.82 16 2 O -0.41 -13.03 10.22 -148.98 -1.52 -14.55 16 3 C 0.10 3.46 2.13 30.13 0.06 3.52 16 4 H 0.04 1.60 6.25 -2.38 -0.01 1.59 16 5 C -0.13 -4.27 5.24 30.20 0.16 -4.11 16 6 C -0.10 -3.85 5.26 28.74 0.15 -3.70 16 7 C -0.11 -5.09 4.51 28.74 0.13 -4.96 16 8 C 0.05 2.45 1.75 -11.93 -0.02 2.43 16 9 H 0.00 -0.12 6.99 -2.39 -0.02 -0.13 16 10 C -0.53 -29.69 8.44 25.60 0.22 -29.47 16 11 H 0.05 2.79 7.46 -2.91 -0.02 2.77 16 12 C 0.01 0.68 5.18 84.66 0.44 1.12 16 13 N -0.91 -52.85 11.47 21.45 0.25 -52.61 16 14 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 C -0.10 -4.03 4.88 30.14 0.15 -3.88 16 19 C -0.10 -3.75 5.49 31.31 0.17 -3.58 16 20 H 0.05 1.06 7.61 -2.39 -0.02 1.04 16 21 H 0.04 0.95 8.07 -2.38 -0.02 0.93 16 22 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.08 2.27 7.37 -2.39 -0.02 2.25 16 24 H 0.07 2.33 6.99 -2.39 -0.02 2.32 16 25 H 0.04 1.61 7.47 -2.39 -0.02 1.59 16 26 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.03 1.35 7.47 -2.39 -0.02 1.33 16 28 H 0.05 2.87 5.90 -2.39 -0.01 2.85 16 29 H 0.26 14.34 8.31 -92.71 -0.77 13.56 16 30 H 0.05 2.07 7.48 -2.39 -0.02 2.06 16 31 H 0.05 2.07 6.63 -2.39 -0.02 2.06 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -59.50 252.70 4.48 -55.02 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.06 Total: 7.11 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 2.67 Total: -40.83 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.25 Total: -52.61 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.52 Total: -14.55 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -59.50 4.48 -55.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.602 kcal (2) G-P(sol) polarization free energy of solvation -59.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds