Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47275 * 2 1 4 4 C 1.52997 * 109.47046 * 119.99770 * 2 1 3 5 5 C 1.52995 * 109.47428 * 60.00286 * 4 2 1 6 6 C 1.52998 * 109.47054 * 59.99673 * 5 4 2 7 7 C 1.52997 * 109.47270 * 300.00424 * 6 5 4 8 8 H 1.09003 * 109.47237 * 299.99499 * 7 6 5 9 9 C 1.52998 * 109.46930 * 179.97438 * 7 6 5 10 10 C 1.50706 * 109.47348 * 65.00065 * 9 7 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.52994 * 109.47101 * 59.99996 * 7 6 5 19 19 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47623 * 300.00505 * 1 2 3 21 21 H 1.09005 * 109.46653 * 60.00314 * 1 2 3 22 22 H 0.96695 * 113.99907 * 59.99473 * 3 2 1 23 23 H 1.09003 * 109.47237 * 180.02562 * 4 2 1 24 24 H 1.09005 * 109.47237 * 300.00224 * 4 2 1 25 25 H 1.09005 * 109.47556 * 180.02562 * 5 4 2 26 26 H 1.09008 * 109.47064 * 299.99874 * 5 4 2 27 27 H 1.09001 * 109.47186 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.46837 * 60.00755 * 6 5 4 29 29 H 1.09001 * 109.47671 * 305.00274 * 9 7 6 30 30 H 1.09006 * 109.47297 * 184.99993 * 9 7 6 31 31 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 32 32 H 1.09003 * 109.47481 * 59.99652 * 18 7 6 33 33 H 1.09000 * 109.47321 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2493 6 6 2.0400 -2.8849 0.0001 7 6 1.5301 -2.1637 -1.2491 8 1 0.4400 -2.1638 -1.2492 9 6 2.0406 -2.8847 -2.4983 10 6 1.4403 -4.2655 -2.5621 11 1 0.7626 -4.5960 -1.7887 12 6 1.7560 -5.1069 -3.6077 13 7 2.5816 -4.7047 -4.5491 14 14 1.0124 -6.8187 -3.6863 15 1 1.5069 -7.5179 -4.8994 16 1 1.4062 -7.5856 -2.4772 17 1 -0.4677 -6.7131 -3.7452 18 6 2.0400 -0.7213 -1.2492 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.7209 1.8653 0.7650 23 1 3.1299 -0.7208 1.2495 24 1 1.6765 -0.2073 2.1393 25 1 1.8930 -2.6774 2.1396 26 1 0.4399 -2.1637 1.2493 27 1 1.6764 -3.9125 -0.0001 28 1 3.1300 -2.8849 0.0002 29 1 3.1270 -2.9626 -2.4544 30 1 1.7523 -2.3218 -3.3861 31 1 2.9680 -3.8159 -4.5081 32 1 3.1301 -0.7212 -1.2491 33 1 1.6764 -0.2073 -2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -92.444161 kcal Electronic energy + Delta-G solvation = -13285.714398 eV Core-core repulsion = 11116.637661 eV Total energy + Delta-G solvation = -2169.076737 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.39537 -35.74186 -33.37613 -31.08523 -30.33748 -26.81493 -26.21094 -23.07138 -21.74731 -20.48778 -18.40044 -16.77959 -16.38071 -15.08921 -14.50237 -14.05824 -13.69603 -13.63279 -13.07151 -12.55692 -12.43168 -11.78182 -11.57606 -11.48596 -11.22899 -10.94787 -10.69775 -10.50410 -10.44740 -10.10471 -10.02097 -9.80836 -9.42324 -9.15547 -8.44158 -8.27645 -6.30463 -3.98809 3.45488 3.47492 3.66131 4.36748 4.59113 4.92031 5.01005 5.24568 5.43968 5.49063 5.54694 5.62397 5.83594 5.93633 5.98740 6.01729 6.08960 6.18210 6.22745 6.44468 6.52586 6.58744 6.70227 6.95579 7.00377 7.10031 7.45932 7.61633 7.83129 8.27980 8.51834 8.94298 9.73012 11.09966 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057321 B = 0.008728 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.355845 B = 3207.474101 C = 3399.166888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 O -0.565 6.565 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.070 4.070 8 H 0.062 0.938 9 C 0.014 3.986 10 C -0.595 4.595 11 H 0.049 0.951 12 C 0.012 3.988 13 N -0.915 5.915 14 Si 1.067 2.933 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.289 1.289 18 C -0.099 4.099 19 H 0.076 0.924 20 H 0.049 0.951 21 H 0.060 0.940 22 H 0.367 0.633 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.007 0.993 30 H 0.006 0.994 31 H 0.269 0.731 32 H 0.061 0.939 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 7.496 11.165 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 O -0.370 6.370 4 C -0.177 4.177 5 C -0.158 4.158 6 C -0.144 4.144 7 C -0.089 4.089 8 H 0.080 0.920 9 C -0.023 4.023 10 C -0.633 4.633 11 H 0.067 0.933 12 C -0.191 4.191 13 N -0.552 5.552 14 Si 0.895 3.105 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.215 1.215 18 C -0.137 4.137 19 H 0.095 0.905 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.213 0.787 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.891 5.897 9.696 11.711 hybrid contribution -0.231 1.632 1.499 2.228 sum -3.122 7.529 11.195 13.848 Atomic orbital electron populations 1.22560 0.96193 1.03334 1.01504 1.21294 0.92525 0.81246 0.96121 1.86587 1.77391 1.23988 1.49043 1.22181 1.01429 0.96994 0.97053 1.21626 1.00669 0.94541 0.98923 1.21533 1.00159 0.99887 0.92798 1.21097 0.99593 0.91376 0.96835 0.92007 1.19258 0.95847 0.95551 0.91682 1.22035 1.30438 0.99703 1.11169 0.93258 1.25815 0.95943 1.04545 0.92802 1.70773 1.28925 1.21412 1.34059 0.83578 0.75701 0.75119 0.76079 1.20837 1.21522 1.21539 1.21607 1.00907 0.96113 0.95058 0.90501 0.93180 0.92133 0.78686 0.91553 0.92707 0.92554 0.92035 0.90855 0.92834 0.97497 0.97568 0.92105 0.92003 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 8.12 37.15 0.30 -2.16 16 2 C 0.13 1.94 1.15 -90.62 -0.10 1.84 16 3 O -0.56 -8.24 12.98 -35.23 -0.46 -8.70 16 4 C -0.14 -1.92 5.07 -26.74 -0.14 -2.06 16 5 C -0.12 -1.78 5.65 -26.73 -0.15 -1.93 16 6 C -0.11 -2.00 5.01 -26.73 -0.13 -2.13 16 7 C -0.07 -1.45 1.86 -90.63 -0.17 -1.62 16 8 H 0.06 1.28 6.43 -51.93 -0.33 0.95 16 9 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 10 C -0.60 -16.86 8.41 -34.44 -0.29 -17.15 16 11 H 0.05 1.36 7.05 -52.48 -0.37 0.99 16 12 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 13 N -0.92 -28.47 13.65 55.43 0.76 -27.72 16 14 Si 1.07 25.52 29.90 -169.99 -5.08 20.44 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.10 -1.84 4.38 -26.74 -0.12 -1.96 16 19 H 0.08 1.11 4.81 -51.93 -0.25 0.86 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.37 3.67 9.04 45.56 0.41 4.08 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.88 6.43 -51.92 -0.33 0.54 16 27 H 0.07 1.50 6.95 -51.93 -0.36 1.14 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 30 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 31 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 255.82 15.07 3.86 3.86 Total: -1.00 -31.15 255.82 -6.47 -37.62 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.54 Total: 1.17 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -1.00 Total: -26.67 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.76 Total: -27.72 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.46 Total: -8.70 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.15 -6.47 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.823 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds