Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47275 * 2 1 4 4 C 1.52997 * 109.47046 * 119.99770 * 2 1 3 5 5 C 1.52995 * 109.47428 * 60.00286 * 4 2 1 6 6 C 1.52998 * 109.47054 * 59.99673 * 5 4 2 7 7 C 1.52997 * 109.47270 * 300.00424 * 6 5 4 8 8 H 1.09003 * 109.47237 * 299.99499 * 7 6 5 9 9 C 1.52998 * 109.46930 * 179.97438 * 7 6 5 10 10 C 1.50706 * 109.47348 * 65.00065 * 9 7 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.52994 * 109.47101 * 59.99996 * 7 6 5 19 19 H 1.09000 * 109.47202 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47623 * 300.00505 * 1 2 3 21 21 H 1.09005 * 109.46653 * 60.00314 * 1 2 3 22 22 H 0.96695 * 113.99907 * 59.99473 * 3 2 1 23 23 H 1.09003 * 109.47237 * 180.02562 * 4 2 1 24 24 H 1.09005 * 109.47237 * 300.00224 * 4 2 1 25 25 H 1.09005 * 109.47556 * 180.02562 * 5 4 2 26 26 H 1.09008 * 109.47064 * 299.99874 * 5 4 2 27 27 H 1.09001 * 109.47186 * 180.02562 * 6 5 4 28 28 H 1.08999 * 109.46837 * 60.00755 * 6 5 4 29 29 H 1.09001 * 109.47671 * 305.00274 * 9 7 6 30 30 H 1.09006 * 109.47297 * 184.99993 * 9 7 6 31 31 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 32 32 H 1.09003 * 109.47481 * 59.99652 * 18 7 6 33 33 H 1.09000 * 109.47321 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.5300 -2.1637 1.2493 6 6 2.0400 -2.8849 0.0001 7 6 1.5301 -2.1637 -1.2491 8 1 0.4400 -2.1638 -1.2492 9 6 2.0406 -2.8847 -2.4983 10 6 1.4403 -4.2655 -2.5621 11 1 0.7626 -4.5960 -1.7887 12 6 1.7560 -5.1069 -3.6077 13 7 2.5816 -4.7047 -4.5491 14 14 1.0124 -6.8187 -3.6863 15 1 1.5069 -7.5179 -4.8994 16 1 1.4062 -7.5856 -2.4772 17 1 -0.4677 -6.7131 -3.7452 18 6 2.0400 -0.7213 -1.2492 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.7209 1.8653 0.7650 23 1 3.1299 -0.7208 1.2495 24 1 1.6765 -0.2073 2.1393 25 1 1.8930 -2.6774 2.1396 26 1 0.4399 -2.1637 1.2493 27 1 1.6764 -3.9125 -0.0001 28 1 3.1300 -2.8849 0.0002 29 1 3.1270 -2.9626 -2.4544 30 1 1.7523 -2.3218 -3.3861 31 1 2.9680 -3.8159 -4.5081 32 1 3.1301 -0.7212 -1.2491 33 1 1.6764 -0.2073 -2.1389 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031939.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -113.621194 kcal Electronic energy + Delta-G solvation = -13286.632703 eV Core-core repulsion = 11116.637661 eV Total energy + Delta-G solvation = -2169.995042 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72133 -37.19048 -35.31257 -32.78147 -31.61344 -28.46451 -27.68988 -25.12076 -23.07397 -22.10346 -19.81336 -18.87198 -17.65118 -16.37820 -15.82855 -15.61679 -15.59380 -15.11422 -14.78532 -14.03176 -13.86478 -13.37393 -13.05185 -12.95238 -12.66753 -12.52996 -12.46643 -12.04416 -11.91848 -11.85430 -11.54922 -11.34166 -10.91792 -10.61742 -10.53841 -10.50159 -8.66714 -6.36073 1.51712 1.60804 1.79478 2.57596 3.17577 3.22608 3.70711 3.78513 4.02590 4.18681 4.26406 4.36640 4.42601 4.55113 4.64164 4.71466 4.88122 4.96081 4.98425 5.05293 5.08715 5.18089 5.22256 5.34732 5.37916 5.42621 5.51570 5.69884 6.03925 6.20766 6.59145 6.94322 7.46202 8.73573 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057321 B = 0.008728 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.355845 B = 3207.474101 C = 3399.166888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.134 3.866 3 O -0.579 6.579 4 C -0.134 4.134 5 C -0.112 4.112 6 C -0.104 4.104 7 C -0.061 4.061 8 H 0.063 0.937 9 C 0.014 3.986 10 C -0.603 4.603 11 H 0.057 0.943 12 C -0.045 4.045 13 N -0.943 5.943 14 Si 1.117 2.883 15 H -0.286 1.286 16 H -0.267 1.267 17 H -0.268 1.268 18 C -0.099 4.099 19 H 0.068 0.932 20 H 0.084 0.916 21 H 0.050 0.950 22 H 0.391 0.609 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.040 0.960 29 H -0.019 1.019 30 H -0.021 1.021 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 7.635 13.632 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.094 3.906 3 O -0.387 6.387 4 C -0.171 4.171 5 C -0.149 4.149 6 C -0.142 4.142 7 C -0.079 4.079 8 H 0.081 0.919 9 C -0.023 4.023 10 C -0.641 4.641 11 H 0.075 0.925 12 C -0.242 4.242 13 N -0.581 5.581 14 Si 0.938 3.062 15 H -0.212 1.212 16 H -0.192 1.192 17 H -0.193 1.193 18 C -0.137 4.137 19 H 0.087 0.913 20 H 0.103 0.897 21 H 0.069 0.931 22 H 0.241 0.759 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.000 1.000 30 H -0.003 1.003 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.284 6.073 12.199 14.285 hybrid contribution 0.240 1.661 0.703 1.820 sum -4.044 7.734 12.902 15.577 Atomic orbital electron populations 1.22522 0.94759 1.03177 1.02822 1.21088 0.93423 0.81586 0.94549 1.86528 1.77686 1.23724 1.50805 1.22150 1.01007 0.96288 0.97675 1.21567 1.01371 0.94893 0.97092 1.21466 0.99380 0.99201 0.94130 1.20918 0.99405 0.92420 0.95179 0.91864 1.19226 0.94230 0.95378 0.93484 1.22431 1.30042 1.00577 1.11063 0.92491 1.27483 0.95597 1.08730 0.92371 1.70918 1.30807 1.20802 1.35533 0.82946 0.76059 0.70462 0.76727 1.21162 1.19208 1.19269 1.21505 0.99903 0.95245 0.97039 0.91321 0.89714 0.93064 0.75946 0.92369 0.88861 0.90348 0.90790 0.92772 0.94082 1.00047 1.00303 0.93854 0.93547 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 8.12 71.98 0.58 -3.72 16 2 C 0.13 3.75 1.15 -10.80 -0.01 3.74 16 3 O -0.58 -15.37 12.98 -148.98 -1.93 -17.30 16 4 C -0.13 -3.23 5.07 30.59 0.16 -3.07 16 5 C -0.11 -2.98 5.65 30.59 0.17 -2.80 16 6 C -0.10 -3.87 5.01 30.59 0.15 -3.72 16 7 C -0.06 -2.55 1.86 -10.80 -0.02 -2.57 16 8 H 0.06 2.63 6.43 -2.39 -0.02 2.61 16 9 C 0.01 0.75 3.76 29.85 0.11 0.86 16 10 C -0.60 -34.86 8.41 25.60 0.22 -34.65 16 11 H 0.06 3.14 7.05 -2.91 -0.02 3.12 16 12 C -0.05 -2.69 5.46 84.65 0.46 -2.23 16 13 N -0.94 -60.55 13.65 21.45 0.29 -60.26 16 14 Si 1.12 51.02 29.90 68.60 2.05 53.08 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 18 C -0.10 -3.73 4.38 30.59 0.13 -3.60 16 19 H 0.07 1.80 4.81 -2.39 -0.01 1.79 16 20 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.39 6.24 9.04 -74.06 -0.67 5.57 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.07 1.83 6.43 -2.38 -0.02 1.81 16 27 H 0.05 2.19 6.95 -2.39 -0.02 2.17 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H -0.02 -1.10 8.01 -2.39 -0.02 -1.12 16 30 H -0.02 -1.25 8.01 -2.38 -0.02 -1.27 16 31 H 0.25 16.55 7.22 -92.71 -0.67 15.88 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.15 255.82 2.88 -66.27 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.51 Total: 9.96 kcal Atomic # 6 Polarization: -53.71 SS G_CDS: 1.96 Total: -51.76 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.29 Total: -60.26 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.93 Total: -17.30 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.08 kcal Total: -69.15 2.88 -66.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031939.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.349 kcal (2) G-P(sol) polarization free energy of solvation -69.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds