Wall clock time and date at job start Mon Mar 30 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 8 8 H 1.09002 * 109.46589 * 60.00959 * 7 6 5 9 9 C 1.53002 * 109.46711 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47344 * 295.00318 * 9 7 6 11 11 H 1.08008 * 119.99889 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00315 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00243 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99673 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47355 * 89.99887 * 14 12 10 16 16 H 1.48500 * 109.46879 * 209.99751 * 14 12 10 17 17 H 1.48507 * 109.46872 * 329.99372 * 14 12 10 18 18 C 1.52997 * 109.47445 * 300.00628 * 7 6 5 19 19 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 22 22 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 23 23 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 27 27 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 28 28 H 1.08988 * 109.47406 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47047 * 55.00521 * 9 7 6 30 30 H 1.08999 * 109.47029 * 175.00442 * 9 7 6 31 31 H 0.97006 * 119.99931 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47045 * 300.00058 * 18 7 6 33 33 H 1.09000 * 109.47140 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2494 8 1 0.4399 -2.1637 1.2493 9 6 2.0404 -2.8846 2.4986 10 6 1.4399 -4.2653 2.5624 11 1 0.7623 -4.5958 1.7890 12 6 1.7555 -5.1067 3.6081 13 7 1.2311 -6.3115 3.6640 14 14 2.9269 -4.5349 4.9461 15 1 2.1554 -3.8796 6.0326 16 1 3.6598 -5.7040 5.4951 17 1 3.8969 -3.5667 4.3742 18 6 2.0399 -0.7212 1.2493 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.7211 1.8653 -0.7650 23 1 1.6767 -0.2075 -2.1392 24 1 3.1301 -0.7217 -1.2489 25 1 1.8930 -2.6775 -2.1393 26 1 0.4400 -2.1638 -1.2491 27 1 3.1299 -2.8850 0.0002 28 1 1.6770 -3.9127 -0.0001 29 1 3.1267 -2.9625 2.4548 30 1 1.7520 -2.3216 3.3863 31 1 1.4535 -6.9036 4.3995 32 1 3.1300 -0.7212 1.2493 33 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:57 Heat of formation + Delta-G solvation = -85.107181 kcal Electronic energy + Delta-G solvation = -13289.747768 eV Core-core repulsion = 11120.989186 eV Total energy + Delta-G solvation = -2168.758582 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.39305 -35.72299 -33.07569 -31.35512 -30.33712 -27.40074 -26.52747 -22.91389 -21.74469 -20.09928 -18.42424 -16.69162 -16.41911 -15.15200 -14.52966 -14.26731 -13.77180 -13.62883 -12.83447 -12.60232 -12.36462 -12.00131 -11.71745 -11.55728 -11.37544 -10.97228 -10.72067 -10.57199 -10.47197 -10.02000 -9.89501 -9.64901 -9.39614 -9.19557 -9.00593 -8.49821 -6.01063 -3.97975 3.33504 3.40948 3.45710 4.37310 4.48751 4.93124 5.01872 5.25312 5.32820 5.49470 5.56755 5.64142 5.83670 5.94195 5.99619 6.02612 6.09375 6.19038 6.24074 6.45483 6.52451 6.59167 6.69721 6.91182 6.97508 7.10544 7.32166 7.50813 7.82749 7.83925 8.57807 9.03971 9.62308 11.12239 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051614 B = 0.009465 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.359019 B = 2957.661392 C = 3200.360756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.128 3.872 3 O -0.566 6.566 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.108 4.108 7 C -0.070 4.070 8 H 0.066 0.934 9 C -0.010 4.010 10 C -0.513 4.513 11 H 0.073 0.927 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.877 3.123 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.101 4.101 19 H 0.049 0.951 20 H 0.078 0.922 21 H 0.060 0.940 22 H 0.367 0.633 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.016 0.984 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.062 0.938 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 11.572 -8.668 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 O -0.371 6.371 4 C -0.177 4.177 5 C -0.158 4.158 6 C -0.146 4.146 7 C -0.088 4.088 8 H 0.085 0.915 9 C -0.047 4.047 10 C -0.551 4.551 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.545 5.545 14 Si 0.705 3.295 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.138 4.138 19 H 0.068 0.932 20 H 0.096 0.904 21 H 0.079 0.921 22 H 0.214 0.786 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.771 11.203 -7.994 13.784 hybrid contribution 0.316 0.337 0.240 0.521 sum 1.088 11.540 -7.754 13.946 Atomic orbital electron populations 1.22569 0.96131 1.03453 1.01511 1.21287 0.92571 0.81224 0.96098 1.86575 1.77422 1.24013 1.49068 1.22187 1.01397 0.97068 0.97028 1.21621 1.00769 0.94417 0.98965 1.21549 1.00154 1.00186 0.92670 1.21056 0.99967 0.91272 0.96517 0.91549 1.19622 0.96431 0.96092 0.92580 1.21142 1.27754 0.96794 1.09453 0.90851 1.25024 0.95864 0.94794 0.97886 1.69915 1.44625 1.07602 1.32343 0.86816 0.81896 0.78353 0.82457 1.20381 1.21501 1.19001 1.21619 1.00937 0.96104 0.95167 0.93190 0.90367 0.92130 0.78649 0.92720 0.91568 0.92508 0.91948 0.92785 0.90434 0.96598 0.97069 0.92846 0.91948 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.12 37.16 0.30 -2.08 16 2 C 0.13 1.86 1.15 -90.62 -0.10 1.76 16 3 O -0.57 -7.90 12.98 -35.23 -0.46 -8.36 16 4 C -0.14 -1.86 5.07 -26.73 -0.14 -2.00 16 5 C -0.12 -1.75 5.65 -26.73 -0.15 -1.90 16 6 C -0.11 -1.97 5.01 -26.73 -0.13 -2.11 16 7 C -0.07 -1.37 1.86 -90.62 -0.17 -1.54 16 8 H 0.07 1.32 6.43 -51.93 -0.33 0.99 16 9 C -0.01 -0.24 3.51 -27.88 -0.10 -0.34 16 10 C -0.51 -14.45 8.96 -34.44 -0.31 -14.76 16 11 H 0.07 2.20 7.30 -52.48 -0.38 1.81 16 12 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 13 N -0.91 -27.98 13.96 55.43 0.77 -27.20 16 14 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 18 C -0.10 -1.76 4.38 -26.73 -0.12 -1.88 16 19 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 20 H 0.08 1.10 4.81 -51.93 -0.25 0.85 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.37 3.50 9.05 45.56 0.41 3.91 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.88 6.43 -51.93 -0.33 0.55 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.58 6.95 -51.94 -0.36 1.22 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 253.53 15.07 3.82 3.82 Total: -1.00 -30.70 253.53 -6.11 -36.81 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.56 Total: 0.62 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -1.01 Total: -23.03 kcal Atomic # 7 Polarization: -27.98 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.46 Total: -8.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.70 -6.11 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.301 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds