Wall clock time and date at job start Mon Mar 30 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 8 8 H 1.09002 * 109.46589 * 60.00959 * 7 6 5 9 9 C 1.53002 * 109.46711 * 180.02562 * 7 6 5 10 10 C 1.50696 * 109.47344 * 295.00318 * 9 7 6 11 11 H 1.08008 * 119.99889 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00315 * 180.02562 * 10 9 7 13 13 N 1.31511 * 120.00243 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99673 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47355 * 89.99887 * 14 12 10 16 16 H 1.48500 * 109.46879 * 209.99751 * 14 12 10 17 17 H 1.48507 * 109.46872 * 329.99372 * 14 12 10 18 18 C 1.52997 * 109.47445 * 300.00628 * 7 6 5 19 19 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 20 20 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 22 22 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 23 23 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 27 27 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 28 28 H 1.08988 * 109.47406 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47047 * 55.00521 * 9 7 6 30 30 H 1.08999 * 109.47029 * 175.00442 * 9 7 6 31 31 H 0.97006 * 119.99931 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.47045 * 300.00058 * 18 7 6 33 33 H 1.09000 * 109.47140 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 6 1.5299 -2.1637 1.2494 8 1 0.4399 -2.1637 1.2493 9 6 2.0404 -2.8846 2.4986 10 6 1.4399 -4.2653 2.5624 11 1 0.7623 -4.5958 1.7890 12 6 1.7555 -5.1067 3.6081 13 7 1.2311 -6.3115 3.6640 14 14 2.9269 -4.5349 4.9461 15 1 2.1554 -3.8796 6.0326 16 1 3.6598 -5.7040 5.4951 17 1 3.8969 -3.5667 4.3742 18 6 2.0399 -0.7212 1.2493 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.7211 1.8653 -0.7650 23 1 1.6767 -0.2075 -2.1392 24 1 3.1301 -0.7217 -1.2489 25 1 1.8930 -2.6775 -2.1393 26 1 0.4400 -2.1638 -1.2491 27 1 3.1299 -2.8850 0.0002 28 1 1.6770 -3.9127 -0.0001 29 1 3.1267 -2.9625 2.4548 30 1 1.7520 -2.3216 3.3863 31 1 1.4535 -6.9036 4.3995 32 1 3.1300 -0.7212 1.2493 33 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:56 Heat of formation + Delta-G solvation = -106.277143 kcal Electronic energy + Delta-G solvation = -13290.665767 eV Core-core repulsion = 11120.989186 eV Total energy + Delta-G solvation = -2169.676580 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.64510 -37.05772 -34.98227 -33.09683 -31.55268 -29.17874 -27.71620 -24.74159 -23.02776 -21.68952 -19.80800 -18.80188 -17.59024 -16.52908 -16.10935 -15.69416 -15.34299 -14.88764 -14.72267 -14.09107 -13.80741 -13.64287 -13.10410 -12.90721 -12.63131 -12.46264 -12.38448 -12.17626 -11.82032 -11.71175 -11.54463 -11.30062 -10.95962 -10.80748 -10.75146 -10.50106 -8.27339 -6.29069 1.34126 1.35652 1.47673 2.36340 3.07814 3.28349 3.78194 3.85789 4.09683 4.25958 4.33134 4.42917 4.48611 4.63350 4.71623 4.77973 4.93592 5.02375 5.06429 5.12500 5.14838 5.24108 5.28252 5.41468 5.43724 5.48918 5.57035 5.74458 5.76999 6.32865 6.77776 6.98880 7.34618 8.89076 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051614 B = 0.009465 C = 0.008747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.359019 B = 2957.661392 C = 3200.360756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 O -0.577 6.577 4 C -0.133 4.133 5 C -0.114 4.114 6 C -0.107 4.107 7 C -0.064 4.064 8 H 0.060 0.940 9 C -0.009 4.009 10 C -0.516 4.516 11 H 0.039 0.961 12 C 0.003 3.997 13 N -0.952 5.952 14 Si 0.943 3.057 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.251 1.251 18 C -0.099 4.099 19 H 0.079 0.921 20 H 0.065 0.935 21 H 0.053 0.947 22 H 0.390 0.610 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.265 0.735 32 H 0.056 0.944 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 13.762 -9.503 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.093 3.907 3 O -0.385 6.385 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.144 4.144 7 C -0.083 4.083 8 H 0.078 0.922 9 C -0.047 4.047 10 C -0.554 4.554 11 H 0.058 0.942 12 C -0.193 4.193 13 N -0.593 5.593 14 Si 0.768 3.232 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.175 1.175 18 C -0.137 4.137 19 H 0.098 0.902 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.239 0.761 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.390 13.421 -8.853 16.137 hybrid contribution 0.073 -0.361 0.455 0.585 sum 1.464 13.060 -8.398 15.596 Atomic orbital electron populations 1.22536 0.95162 1.02997 1.02758 1.21089 0.93161 0.81633 0.94829 1.86516 1.77634 1.23644 1.50723 1.22142 1.01189 0.95937 0.97767 1.21558 1.01100 0.95193 0.97258 1.21476 0.99857 0.98792 0.94299 1.20920 0.99514 0.92729 0.95130 0.92178 1.19600 0.95969 0.94162 0.94928 1.21434 1.26881 0.98811 1.08298 0.94243 1.25946 0.97867 0.94840 1.00647 1.70059 1.46598 1.09066 1.33564 0.85755 0.79860 0.78260 0.79369 1.19365 1.20975 1.17517 1.21506 1.00479 0.94665 0.97026 0.90190 0.91624 0.92742 0.76067 0.89340 0.91927 0.90827 0.91392 0.93118 0.93719 0.96793 0.97020 0.92664 0.92547 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.21 8.12 71.98 0.58 -3.63 16 2 C 0.13 3.49 1.15 -10.79 -0.01 3.48 16 3 O -0.58 -14.09 12.98 -148.98 -1.93 -16.02 16 4 C -0.13 -3.09 5.07 30.59 0.16 -2.93 16 5 C -0.11 -3.07 5.65 30.59 0.17 -2.89 16 6 C -0.11 -3.89 5.01 30.60 0.15 -3.74 16 7 C -0.06 -2.53 1.86 -10.79 -0.02 -2.55 16 8 H 0.06 2.42 6.43 -2.39 -0.02 2.40 16 9 C -0.01 -0.44 3.51 29.85 0.10 -0.34 16 10 C -0.52 -29.92 8.96 25.60 0.23 -29.69 16 11 H 0.04 2.48 7.30 -2.91 -0.02 2.46 16 12 C 0.00 0.20 5.47 84.66 0.46 0.66 16 13 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 14 Si 0.94 45.55 27.47 68.60 1.88 47.43 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 17 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 18 C -0.10 -3.34 4.38 30.59 0.13 -3.20 16 19 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.06 1.73 4.81 -2.39 -0.01 1.72 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.39 5.70 9.05 -74.06 -0.67 5.03 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.77 6.43 -2.39 -0.02 1.76 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.89 6.95 -2.39 -0.02 1.87 16 29 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 30 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 31 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.88 253.53 2.57 -64.31 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.35 Total: 9.20 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 1.96 Total: -44.83 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.30 Total: -60.09 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.93 Total: -16.02 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -66.88 2.57 -64.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.965 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds