Wall clock time and date at job start Mon Mar 30 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99724 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 8 8 H 1.09002 * 109.47067 * 59.99825 * 7 6 5 9 9 C 1.53005 * 109.46982 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47470 * 295.00003 * 9 7 6 11 11 H 1.08001 * 119.99602 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00220 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00089 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47241 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47067 * 120.00104 * 14 12 10 17 17 H 1.48499 * 109.46973 * 239.99976 * 14 12 10 18 18 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 19 19 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 22 22 H 0.96702 * 113.99404 * 59.99785 * 3 2 1 23 23 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 27 27 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 28 28 H 1.09004 * 109.46724 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46735 * 55.00527 * 9 7 6 30 30 H 1.09000 * 109.47333 * 174.99784 * 9 7 6 31 31 H 0.96998 * 119.99888 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47103 * 300.00247 * 18 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7203 -1.2488 8 1 3.9335 0.3075 -1.2486 9 6 4.0815 -1.4409 -2.4981 10 6 5.5834 -1.3336 -2.5610 11 1 6.1198 -0.8047 -1.7871 12 6 6.2727 -1.9115 -3.6059 13 7 5.6195 -2.5559 -4.5481 14 14 8.1344 -1.7790 -3.6835 15 1 8.6250 -1.0084 -2.5127 16 1 8.7286 -3.1397 -3.6655 17 1 8.5293 -1.0829 -4.9344 18 6 2.0400 -0.7212 -1.2491 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.7210 1.8653 0.7651 23 1 1.6766 -0.2074 2.1393 24 1 1.6767 -1.7489 1.2492 25 1 3.9333 -1.2349 2.1394 26 1 3.9330 0.3072 1.2498 27 1 3.7176 -2.4693 0.0002 28 1 5.1706 -1.4408 0.0005 29 1 3.7938 -2.4914 -2.4548 30 1 3.6470 -0.9815 -3.3859 31 1 6.1045 -2.9628 -5.2830 32 1 1.6767 -1.7489 -1.2491 33 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261031952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:58 Heat of formation + Delta-G solvation = -89.997814 kcal Electronic energy + Delta-G solvation = -13238.106514 eV Core-core repulsion = 11069.135858 eV Total energy + Delta-G solvation = -2168.970656 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.15517 -35.23755 -32.92802 -31.19528 -30.91681 -26.98554 -25.94372 -23.09440 -21.41976 -19.93091 -18.94217 -16.25419 -16.02349 -15.04935 -14.40749 -14.30841 -13.72669 -13.20463 -13.02849 -12.32307 -12.08835 -11.74698 -11.66693 -11.49901 -11.23709 -10.85057 -10.70165 -10.53154 -10.37150 -10.20108 -9.99774 -9.48480 -9.33679 -8.86119 -8.74057 -8.26219 -5.91403 -3.91939 3.35840 3.43177 3.47706 4.52594 4.52975 4.98975 5.10957 5.20519 5.43653 5.49295 5.66204 5.73426 5.92945 5.97453 6.07078 6.11605 6.19933 6.22301 6.33482 6.50757 6.62818 6.78604 6.87223 7.18495 7.26695 7.32992 7.79291 7.95634 7.98703 8.10815 8.54953 9.15005 9.71060 11.20177 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057457 B = 0.008690 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.206036 B = 3221.229095 C = 3416.416065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.128 3.872 3 O -0.551 6.551 4 C -0.139 4.139 5 C -0.117 4.117 6 C -0.104 4.104 7 C -0.075 4.075 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.510 4.510 11 H 0.056 0.944 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.099 4.099 19 H 0.063 0.937 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.363 0.637 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.013 0.987 30 H 0.014 0.986 31 H 0.258 0.742 32 H 0.066 0.934 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 3.868 10.735 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.088 3.912 3 O -0.355 6.355 4 C -0.177 4.177 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.094 4.094 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.147 4.147 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.136 4.136 19 H 0.082 0.918 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.209 0.791 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.972 3.566 10.008 13.283 hybrid contribution 0.688 0.110 0.392 0.799 sum -7.285 3.676 10.400 13.219 Atomic orbital electron populations 1.22502 0.96780 1.02338 1.01815 1.21293 0.91238 0.82418 0.96276 1.86669 1.77075 1.23277 1.48504 1.22183 0.97605 1.00896 0.97033 1.21523 0.94196 1.01216 0.98490 1.21501 1.01279 0.98103 0.93251 1.21121 0.91580 1.00146 0.96551 0.91747 1.19158 0.95576 0.95123 0.91337 1.21317 0.92330 1.33433 1.07719 0.92575 1.25030 0.98157 0.95608 0.95866 1.69982 1.35200 1.36439 1.12169 0.86593 0.86234 0.77633 0.77895 1.19778 1.21153 1.21130 1.21643 0.98461 0.98607 0.94927 0.91841 0.91989 0.93011 0.79114 0.92873 0.91531 0.93200 0.91897 0.93193 0.91279 0.96826 0.96787 0.93244 0.91516 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.82 37.16 0.33 -1.79 16 2 C 0.13 1.89 0.98 -90.63 -0.09 1.80 16 3 O -0.55 -8.39 11.63 -35.23 -0.41 -8.80 16 4 C -0.14 -1.90 4.92 -26.73 -0.13 -2.03 16 5 C -0.12 -1.83 5.78 -26.73 -0.15 -1.98 16 6 C -0.10 -2.02 5.01 -26.73 -0.13 -2.16 16 7 C -0.08 -1.63 1.99 -90.59 -0.18 -1.81 16 8 H 0.06 1.50 7.68 -51.93 -0.40 1.10 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 10 C -0.51 -14.70 8.41 -34.44 -0.29 -14.99 16 11 H 0.06 1.59 7.05 -52.49 -0.37 1.22 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 14 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 C -0.10 -1.81 4.23 -26.71 -0.11 -1.92 16 19 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.36 3.88 9.05 45.56 0.41 4.29 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 262.09 15.07 3.95 3.95 Total: -1.00 -31.27 262.09 -6.63 -37.90 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.90 Total: -0.48 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.99 Total: -22.87 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.74 Total: -26.85 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.41 Total: -8.80 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.27 -6.63 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.093 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds