Wall clock time and date at job start Mon Mar 30 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99724 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 7 7 C 1.53002 * 109.46911 * 59.99917 * 6 5 4 8 8 H 1.09002 * 109.47067 * 59.99825 * 7 6 5 9 9 C 1.53005 * 109.46982 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47470 * 295.00003 * 9 7 6 11 11 H 1.08001 * 119.99602 * 0.02562 * 10 9 7 12 12 C 1.37875 * 120.00220 * 179.97438 * 10 9 7 13 13 N 1.31518 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00089 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47241 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47067 * 120.00104 * 14 12 10 17 17 H 1.48499 * 109.46973 * 239.99976 * 14 12 10 18 18 C 1.52992 * 109.47482 * 239.99866 * 2 1 3 19 19 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 22 22 H 0.96702 * 113.99404 * 59.99785 * 3 2 1 23 23 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 24 24 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 25 25 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46838 * 59.99718 * 5 4 2 27 27 H 1.08992 * 109.47399 * 299.99952 * 6 5 4 28 28 H 1.09004 * 109.46724 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46735 * 55.00527 * 9 7 6 30 30 H 1.09000 * 109.47333 * 174.99784 * 9 7 6 31 31 H 0.96998 * 119.99888 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47103 * 300.00247 * 18 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7203 -1.2488 8 1 3.9335 0.3075 -1.2486 9 6 4.0815 -1.4409 -2.4981 10 6 5.5834 -1.3336 -2.5610 11 1 6.1198 -0.8047 -1.7871 12 6 6.2727 -1.9115 -3.6059 13 7 5.6195 -2.5559 -4.5481 14 14 8.1344 -1.7790 -3.6835 15 1 8.6250 -1.0084 -2.5127 16 1 8.7286 -3.1397 -3.6655 17 1 8.5293 -1.0829 -4.9344 18 6 2.0400 -0.7212 -1.2491 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.7210 1.8653 0.7651 23 1 1.6766 -0.2074 2.1393 24 1 1.6767 -1.7489 1.2492 25 1 3.9333 -1.2349 2.1394 26 1 3.9330 0.3072 1.2498 27 1 3.7176 -2.4693 0.0002 28 1 5.1706 -1.4408 0.0005 29 1 3.7938 -2.4914 -2.4548 30 1 3.6470 -0.9815 -3.3859 31 1 6.1045 -2.9628 -5.2830 32 1 1.6767 -1.7489 -1.2491 33 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031952.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:58 Heat of formation + Delta-G solvation = -111.028111 kcal Electronic energy + Delta-G solvation = -13239.018456 eV Core-core repulsion = 11069.135858 eV Total energy + Delta-G solvation = -2169.882598 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.45837 -36.77340 -34.87230 -32.80908 -32.21666 -28.87149 -27.20333 -25.08459 -22.79552 -21.34923 -20.53981 -18.46991 -17.19750 -16.64115 -16.09665 -15.76631 -15.04815 -14.82227 -14.41653 -13.97679 -13.66291 -13.29564 -13.12929 -12.78864 -12.74808 -12.58966 -12.48364 -12.12734 -11.97522 -11.73534 -11.58765 -11.18150 -11.11825 -10.57213 -10.49403 -10.39852 -8.18516 -6.28081 1.37733 1.38423 1.51858 2.40926 3.13918 3.44793 3.84451 3.92602 4.00086 4.30714 4.37439 4.54072 4.61111 4.72821 4.78364 4.85713 4.96545 5.02912 5.10386 5.21502 5.23327 5.26505 5.40134 5.47518 5.52881 5.54967 5.64151 5.85010 5.93095 6.30351 6.87670 7.08512 7.39991 8.93761 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.057457 B = 0.008690 C = 0.008194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.206036 B = 3221.229095 C = 3416.416065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 O -0.574 6.574 4 C -0.134 4.134 5 C -0.110 4.110 6 C -0.101 4.101 7 C -0.066 4.066 8 H 0.044 0.956 9 C 0.030 3.970 10 C -0.529 4.529 11 H 0.057 0.943 12 C -0.004 4.004 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.279 1.279 18 C -0.100 4.100 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.385 0.615 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.044 0.956 29 H -0.010 1.010 30 H -0.020 1.020 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 4.351 12.851 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.091 3.909 3 O -0.382 6.382 4 C -0.172 4.172 5 C -0.148 4.148 6 C -0.139 4.139 7 C -0.085 4.085 8 H 0.062 0.938 9 C -0.007 4.007 10 C -0.567 4.567 11 H 0.075 0.925 12 C -0.201 4.201 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.204 1.204 18 C -0.138 4.138 19 H 0.090 0.910 20 H 0.072 0.928 21 H 0.099 0.901 22 H 0.234 0.766 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.009 0.991 30 H -0.002 1.002 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.206 4.063 12.148 15.213 hybrid contribution 0.749 -0.034 -0.317 0.814 sum -7.458 4.029 11.832 14.555 Atomic orbital electron populations 1.22418 0.94198 1.03244 1.02895 1.21189 0.93037 0.82134 0.94578 1.86618 1.77659 1.23676 1.50209 1.22170 0.95625 1.01704 0.97697 1.21454 0.96029 1.00466 0.96801 1.21425 0.99766 0.98350 0.94353 1.20916 0.94159 0.98217 0.95201 0.93777 1.19070 0.94954 0.93963 0.92705 1.21671 0.93530 1.33527 1.07966 0.92455 1.25991 1.03756 0.95040 0.95341 1.70115 1.37470 1.37222 1.12855 0.85430 0.79487 0.78073 0.78272 1.18709 1.20172 1.20439 1.21603 0.95767 0.99530 0.96886 0.91047 0.92815 0.90080 0.76597 0.89236 0.90797 0.90982 0.92324 0.93379 0.93752 0.99128 1.00152 0.92902 0.91112 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 8.82 71.98 0.63 -2.91 16 2 C 0.13 3.57 0.98 -10.80 -0.01 3.56 16 3 O -0.57 -16.33 11.63 -148.98 -1.73 -18.06 16 4 C -0.13 -3.17 4.92 30.59 0.15 -3.02 16 5 C -0.11 -3.19 5.78 30.60 0.18 -3.02 16 6 C -0.10 -3.96 5.01 30.60 0.15 -3.80 16 7 C -0.07 -2.95 1.99 -10.78 -0.02 -2.97 16 8 H 0.04 2.12 7.68 -2.39 -0.02 2.10 16 9 C 0.03 1.69 4.45 29.85 0.13 1.82 16 10 C -0.53 -31.50 8.41 25.60 0.22 -31.28 16 11 H 0.06 3.32 7.05 -2.91 -0.02 3.30 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 13 N -0.94 -59.03 13.29 21.45 0.28 -58.74 16 14 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 15 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 C -0.10 -3.69 4.23 30.61 0.13 -3.56 16 19 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.39 6.97 9.05 -74.06 -0.67 6.30 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.76 7.68 -2.39 -0.02 1.74 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.91 6.95 -2.39 -0.02 1.89 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H -0.02 -1.23 8.14 -2.39 -0.02 -1.24 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.43 262.09 2.99 -66.44 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.39 Total: 7.34 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 2.02 Total: -44.99 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.28 Total: -58.74 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.73 Total: -18.06 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -69.43 2.99 -66.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031952.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.590 kcal (2) G-P(sol) polarization free energy of solvation -69.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds