Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 C 1.52997 * 109.47592 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47000 * 64.99686 * 7 6 5 9 9 H 1.07993 * 119.99836 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99968 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99957 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00292 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47328 * 89.99636 * 12 10 8 14 14 H 1.48491 * 109.47397 * 210.00029 * 12 10 8 15 15 H 1.48507 * 109.47070 * 330.00148 * 12 10 8 16 16 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 17 17 C 1.52997 * 109.47445 * 300.00628 * 16 6 5 18 18 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 19 19 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 21 21 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 22 22 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 25 25 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 26 26 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 27 27 H 1.08993 * 109.47132 * 184.99502 * 7 6 5 28 28 H 1.09001 * 109.46547 * 304.99960 * 7 6 5 29 29 H 0.97001 * 120.00298 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.46726 * 180.02562 * 16 6 5 31 31 H 1.09002 * 109.46589 * 60.00959 * 16 6 5 32 32 H 1.09002 * 109.47045 * 300.00058 * 17 16 6 33 33 H 1.09000 * 109.47140 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 6 1.5294 -4.3273 0.0005 8 6 2.1298 -5.0730 -1.1634 9 1 2.8080 -4.5688 -1.8357 10 6 1.8133 -6.3990 -1.3697 11 7 0.9870 -7.0129 -0.5512 12 14 2.5579 -7.3235 -2.8119 13 1 3.8360 -7.9515 -2.3906 14 1 1.6145 -8.3769 -3.2649 15 1 2.8156 -6.3770 -3.9268 16 6 1.5299 -2.1637 1.2494 17 6 2.0399 -0.7212 1.2493 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.7211 1.8653 -0.7650 22 1 1.6767 -0.2075 -2.1392 23 1 3.1301 -0.7217 -1.2489 24 1 1.8930 -2.6775 -2.1393 25 1 0.4400 -2.1638 -1.2491 26 1 3.1299 -2.8850 0.0002 27 1 1.8178 -4.8146 0.9319 28 1 0.4431 -4.3282 -0.0889 29 1 0.7645 -7.9459 -0.6961 30 1 1.8936 -2.6773 2.1394 31 1 0.4399 -2.1637 1.2493 32 1 3.1300 -0.7212 1.2493 33 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = -108.792848 kcal Electronic energy + Delta-G solvation = -13218.292464 eV Core-core repulsion = 11048.506794 eV Total energy + Delta-G solvation = -2169.785670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60727 -37.12909 -34.93827 -32.54147 -31.72161 -29.32710 -27.29598 -24.59037 -23.60181 -21.56117 -19.75097 -18.39276 -17.77276 -16.59641 -16.34492 -15.64754 -15.09328 -14.74981 -14.38912 -14.14079 -13.46334 -13.36290 -13.02134 -12.91901 -12.78461 -12.63149 -12.55935 -12.22451 -12.03061 -11.76143 -11.53513 -11.06483 -10.87824 -10.83035 -10.53568 -10.43826 -8.17249 -6.26484 1.39561 1.40314 1.51201 2.41765 3.15699 3.29927 3.78995 3.86177 4.10397 4.28051 4.34169 4.49387 4.52349 4.63085 4.70096 4.84482 4.94867 5.03835 5.11707 5.17556 5.23090 5.28287 5.34480 5.44282 5.45430 5.57204 5.64466 5.85027 5.91506 6.30801 6.89807 6.95711 7.41777 8.94610 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062232 B = 0.008341 C = 0.007900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.823655 B = 3356.240525 C = 3543.460946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 O -0.575 6.575 4 C -0.135 4.135 5 C -0.098 4.098 6 C -0.076 4.076 7 C 0.032 3.968 8 C -0.529 4.529 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.959 3.041 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.263 1.263 16 C -0.108 4.108 17 C -0.099 4.099 18 H 0.071 0.929 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.389 0.611 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.047 0.953 27 H -0.015 1.015 28 H -0.008 1.008 29 H 0.262 0.738 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 13.844 -0.798 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.094 3.906 3 O -0.383 6.383 4 C -0.173 4.173 5 C -0.135 4.135 6 C -0.095 4.095 7 C -0.005 4.005 8 C -0.568 4.568 9 H 0.078 0.922 10 C -0.200 4.200 11 N -0.576 5.576 12 Si 0.784 3.216 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.187 1.187 16 C -0.145 4.145 17 C -0.136 4.136 18 H 0.090 0.910 19 H 0.081 0.919 20 H 0.083 0.917 21 H 0.239 0.761 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.004 0.996 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.178 13.497 -0.215 13.500 hybrid contribution -0.017 -0.935 -1.023 1.386 sum 0.162 12.563 -1.239 12.625 Atomic orbital electron populations 1.22529 0.95102 1.02904 1.02904 1.21077 0.93197 0.81565 0.94791 1.86484 1.77728 1.23489 1.50596 1.22191 1.00959 0.95824 0.98277 1.21404 1.00180 0.94208 0.97735 1.21085 0.98745 0.94828 0.94802 1.19032 0.94732 0.91896 0.94878 1.21665 1.26907 0.96066 1.12114 0.92240 1.25945 0.95736 0.98942 0.99337 1.70101 1.36509 1.11632 1.39359 0.85532 0.78166 0.78318 0.79569 1.20046 1.20863 1.18711 1.21588 1.00800 0.94452 0.97697 1.21396 1.00739 0.94435 0.97041 0.90954 0.91855 0.91665 0.76129 0.90265 0.92254 0.93110 0.92408 0.93447 0.99622 0.98969 0.92952 0.92414 0.91785 0.92226 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.19 8.12 71.98 0.58 -3.61 16 2 C 0.13 3.52 1.15 -10.79 -0.01 3.50 16 3 O -0.57 -13.78 12.98 -148.98 -1.93 -15.71 16 4 C -0.13 -3.81 5.07 30.59 0.16 -3.65 16 5 C -0.10 -3.54 4.74 30.59 0.14 -3.40 16 6 C -0.08 -3.12 2.14 -10.79 -0.02 -3.15 16 7 C 0.03 1.67 4.45 29.85 0.13 1.80 16 8 C -0.53 -30.06 8.41 25.60 0.22 -29.85 16 9 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 10 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 11 N -0.94 -57.42 13.29 21.45 0.28 -57.14 16 12 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 16 C -0.11 -3.70 4.93 30.60 0.15 -3.55 16 17 C -0.10 -2.88 5.10 30.59 0.16 -2.72 16 18 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 19 H 0.06 1.71 4.81 -2.39 -0.01 1.70 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.39 5.98 9.05 -74.06 -0.67 5.31 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 2.03 6.95 -2.39 -0.02 2.01 16 25 H 0.06 2.07 6.43 -2.39 -0.02 2.06 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.15 6.43 -2.39 -0.02 2.14 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -64.59 257.13 2.75 -61.84 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.41 Total: 8.67 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 1.97 Total: -44.29 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.28 Total: -57.14 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -1.93 Total: -15.71 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -64.59 2.75 -61.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.955 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds